Gene Information

Name : CVAR_3053 (CVAR_3053)
Accession : YP_004759135.1
Strain : Corynebacterium variabile DSM 44702
Genome accession: NC_015859
Putative virulence/resistance : Virulence
Product : two-component system response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 835822 - 836589 bp
Length : 768 bp
Strand : +
Note : -

DNA sequence : 
GTGAAGACCGCGTTGCGAACGTGGGATAAGGTACAACACCCCGTGGTGTCCTGCCAAATGAGCAGGTCAGAAAGTGAGAG
ACTGACCGCCATGCGGATTCTGGTGGTGGACGATGAGGTGAGGCTCGCCGACGGCGTGCGACGCGGTCTCGAGGCTGAGG
GCATGGTCGTCGACGTCGTCAACGACGGGGAGACCGGCCTGGCCATGGCCTCCGACGCCGACTATGACGCCATCGTCCTC
GACGTGATGATGCCCGGCATGAACGGCTACCGCGTCTGCGAGGCGTTGCGTGAGGACGGCAACTGGACCCCGGTGCTTTT
CCTCACCGCTAAGGACGGGGAGTGGGACGAGGTCGAGGGGCTCGACACCGGTGGCGACGACTGGTTGACCAAACCCTTCT
CCTACCCGGTCCTCGTCGCCCGGCTGCGGGCGATGGTCCGCCGCGGCTCCCGGGGACGCCCTGAGATCCTCTCTGCCGGT
GATCTTCGGCTCGATCCGGCGGCCCGGCAGGCCTACCGTAGCGATGACGAGATCCCGCTGACCGCCCGGGAACTCGCCGT
GCTCGACTTCCTGCTGCGCCACGCCGGCGAGGTCGTCACCAAACAGGAGGTGCTCGCCAATGTCTGGGGCGGCTCCTTCG
ACGGGGACACCAATATCGTCGAGGTCTACATCGGCCATCTGCGGGCCAAGGTCGACCGGCCTTTCGGTCGTGCCGCGATC
GGAACCGTCCGTGGCGCCGGCTACCGACTCGACCGGAACGGAGGCTGA

Protein sequence : 
MKTALRTWDKVQHPVVSCQMSRSESERLTAMRILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVL
DVMMPGMNGYRVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGSRGRPEILSAG
DLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVWGGSFDGDTNIVEVYIGHLRAKVDRPFGRAAI
GTVRGAGYRLDRNGG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 6e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CVAR_3053 YP_004759135.1 two-component system response regulator BAC0125 Protein 6e-42 47
CVAR_3053 YP_004759135.1 two-component system response regulator BAC0083 Protein 4e-33 45
CVAR_3053 YP_004759135.1 two-component system response regulator BAC0197 Protein 6e-34 45
CVAR_3053 YP_004759135.1 two-component system response regulator BAC0308 Protein 1e-35 44
CVAR_3053 YP_004759135.1 two-component system response regulator BAC0638 Protein 4e-27 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CVAR_3053 YP_004759135.1 two-component system response regulator VFG0596 Protein 2e-31 42
CVAR_3053 YP_004759135.1 two-component system response regulator VFG1390 Protein 2e-32 42