Gene Information

Name : mntC (CVAR_2013)
Accession : YP_004760437.1
Strain : Corynebacterium variabile DSM 44702
Genome accession: NC_015859
Putative virulence/resistance : Virulence
Product : manganese ABC transport system permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2289270 - 2290166 bp
Length : 897 bp
Strand : +
Note : ABC-type Mn2+/Zn2+ transport systems, permease components

DNA sequence : 
ATGCTGACCTACGAATTCGTCCAACGTGCACTGCTCGTCTCCACCGTCACCGCGGTCACCGCAGGACTGCTGTCCTGCTG
GCTGGTGCTCATCGGCTGGTCCCTCATGGGTGACGCGGTCTCCCACGCGGTCCTGCCCGGTGTGGTCATCTCCTACATCG
TGGGCTGGCCCTTCGCCATCGGCGCCCTGATCGCCGCACTCATCGCCGTCGCTCTCGTCGGCACCGTCGGGGAACGGACC
ACACTCAAGGGGGACACCGCCATCGGCGTGGTCTTCACCGCACTGTTCGCCCTCGGGCTCGTGCTCGTCTCCGTCACCCC
GGCGGGGACGAACCTCCAGGAGATCCTCTTCGGCAACCTGCTCGGGATCTCCCGCGACGCCCTGGTCCAGGTCCTCCTTT
TCGGTGCGATCGCCCTGGTCGTCATGCTCGTCCTGCGCCGCAACATCACCGTCTGGGCCTTCCACCCTGCCCACGCCCGC
GCCGTCGGTGTCCCGACCGGACTCATCCGAGGCGCGGTGATGGTGTGCCTCGCCCTGGTGGTCGTCGCCGCGATGCAGGC
GGTGGGCGTCATCCTCGTCGTCGCCATGCTCATCACCCCCGGTGCGACCGCCTACCTGCTTACCCGCCGGATCAACCGGA
TGCTGGTCATCGCCCCCCTGGTGGCCTGGGTCAGTTCCGTCGCCGGGATCACCCTGAGCTACCGCTACGACGTCTCCGCC
GGCGGCACCATCGTGCTCTTCCAGGCCGGACTCTTCGTGCTGGCCTACCTCTTCGCCCCGCGGGAGGGGCTGGTCACCGC
TCCCCTGCTGAAACGTCGGCGGCGTTCCCGGCACCCTCTCCCCACCCTGCCTGACGCTGCTCCAGCTGACGCCGGAACGT
CGACACCGCGGTCATGA

Protein sequence : 
MLTYEFVQRALLVSTVTAVTAGLLSCWLVLIGWSLMGDAVSHAVLPGVVISYIVGWPFAIGALIAALIAVALVGTVGERT
TLKGDTAIGVVFTALFALGLVLVSVTPAGTNLQEILFGNLLGISRDALVQVLLFGAIALVVMLVLRRNITVWAFHPAHAR
AVGVPTGLIRGAVMVCLALVVVAAMQAVGVILVVAMLITPGATAYLLTRRINRMLVIAPLVAWVSSVAGITLSYRYDVSA
GGTIVLFQAGLFVLAYLFAPREGLVTAPLLKRRRRSRHPLPTLPDAAPADAGTSTPRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 6e-31 42
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 6e-31 42
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 6e-31 42
sitD NP_461785.1 permease Virulence SPI-1 Protein 3e-31 42
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 2e-31 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mntC YP_004760437.1 manganese ABC transport system permease BAC0442 Protein 1e-39 45
mntC YP_004760437.1 manganese ABC transport system permease BAC0352 Protein 1e-31 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mntC YP_004760437.1 manganese ABC transport system permease VFG0528 Protein 1e-31 42