Gene Information

Name : CVAR_0095 (CVAR_0095)
Accession : YP_004758515.1
Strain : Corynebacterium variabile DSM 44702
Genome accession: NC_015859
Putative virulence/resistance : Resistance
Product : hypothetical protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 113669 - 114436 bp
Length : 768 bp
Strand : +
Note : ABC-type antimicrobial peptide transport system, ATPase component

DNA sequence : 
ATGCCCACCGCAACTACCGCCGACAACACCAGCAGCACCGATACCGCCGCCGCCCGCGCGGACGCCCTCACCAAGACCTA
CGGCTCCGGGGACACGAAGGTCACCGCCCTCGACAACGTCTCCGTCTCCTTCGCCGCCGGTGAGTTCACCGCCATCATGG
GCCCGTCCGGCTCCGGAAAGTCCACCCTCATGCACTGCATGGCCGGGCTGGACACCCCCACCTCCGGCTCCGCCTGGCTG
GGGACCACCGACCTGGCGTCCCTGAAAGACAAGGAGCTGACGAAGACCCGCCGCGACCGGCTCGGCTTCATCTTCCAGTC
CTTCAACCTCGTGCCGACCCTCACGGCCGAGGAGAACATCACCCTGCCCACCGACATCGCCGGCCGAAAGGTCGACCGCG
CCTGGTTCGACGAGGTCACCGGCCGTCTCGGGCTCACCGACCGGCTGTCCCACCGCCCCGCCGAGCTCTCCGGCGGCCAG
CAGCAGCGCGTGGCCTGTGCCCGCGCCCTCGTCTCCCGTCCCGAGATCATCTTCGGCGACGAGCCCACCGGCAACCTCGA
CTCGAACTCGTCCGCGGAAGTCCTCGCCATCCTGCGCGCCTCCGTCGACCGCGACGGCCAGACCGTCGTCATCGTCACCC
ATGACGCCAAGGCGGCGGCCTACGCCGACCGCATCCTCTTCCTCGCCGACGGCCGGATCGTCGAGGAACTGCGTCAGCCC
AGCGTCGAATCCATTCTCTCCGTGATGTCCCGCATCGAGGAGTTGTGA

Protein sequence : 
MPTATTADNTSSTDTAAARADALTKTYGSGDTKVTALDNVSVSFAAGEFTAIMGPSGSGKSTLMHCMAGLDTPTSGSAWL
GTTDLASLKDKELTKTRRDRLGFIFQSFNLVPTLTAEENITLPTDIAGRKVDRAWFDEVTGRLGLTDRLSHRPAELSGGQ
QQRVACARALVSRPEIIFGDEPTGNLDSNSSAEVLAILRASVDRDGQTVVIVTHDAKAAAYADRILFLADGRIVEELRQP
SVESILSVMSRIEEL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 9e-39 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-41 42
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 4e-41 42
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 4e-41 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CVAR_0095 YP_004758515.1 hypothetical protein CP001581.1.gene598.p Protein 4e-48 49
CVAR_0095 YP_004758515.1 hypothetical protein CP001581.1.gene798.p Protein 9e-44 47
CVAR_0095 YP_004758515.1 hypothetical protein NC_008702.1.4606598. Protein 4e-38 46
CVAR_0095 YP_004758515.1 hypothetical protein NC_012469.1.7686878. Protein 2e-43 44
CVAR_0095 YP_004758515.1 hypothetical protein NC_012469.1.7685735. Protein 2e-35 41