Gene Information

Name : fliP (CFU_0954)
Accession : YP_004751609.1
Strain : Collimonas fungivorans Ter331
Genome accession: NC_015856
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 1119599 - 1120360 bp
Length : 762 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTCCTCTTTCCTTCCTCGCGCAACACCGCAAACTGCTGACAGCGCTATTGCTGACGCTGCTGCCCACCATCGCCGC
CTCCCAGGCGCTGCCCGGCATCACCAGCACCACCGGCCCCGGCGGCAGCCAGACCTGGTCGCTCAGCGTCCAGACCATGC
TGCTGCTGACTTCGCTCTCATTCCTGCCGGCGCTGCTGCTGGCGATGACCAGCTTCACCCGCATCATCATCGTGCTCGGT
CTGCTGCGCACCGCGATCGGCGCCCAGAGTTCGCCGCCCAACCAGATCCTGGTCGGACTGGCGCTGTTCCTGACTTTTTT
TGTGATGTCGCCGGTATTCGACAAAGCCTACAGCGACGCCTACAAACCCTTTTCCGACAACAAGATCAGCGCCGAACAGG
CGCTGGAGCGCGGCATCCAGCCGTTCAAGCAGTTCATGCTGAAGCAGACCCGCGAAGGCGATCTGGCGCTGTTCGCCAGG
CTGGCCCAGGCGCCGCAGATGCAAGGACCGGAAGAAGTGCCGCTTAGGATACTGGTGCCAGCGTTTGTCATCAGCGAACT
GAAGACGGCGTTCCAGATCGGCTTCACCATCTTTATCCCGTTCCTGATCGTCGACCTGGTGGTGGCCAGCGTTCTGATGT
CGATGGGGATGATGATGGTTCCGCCCGCCACCATTTCACTGCCGTTCAAGCTGATGCTGTTCGTGCTGGTCGACGGCTGG
CAGCTGCTGATCGGCGCCCTGGCCCAAAGTTTCTATACCTGA

Protein sequence : 
MRPLSFLAQHRKLLTALLLTLLPTIAASQALPGITSTTGPGGSQTWSLSVQTMLLLTSLSFLPALLLAMTSFTRIIIVLG
LLRTAIGAQSSPPNQILVGLALFLTFFVMSPVFDKAYSDAYKPFSDNKISAEQALERGIQPFKQFMLKQTREGDLALFAR
LAQAPQMQGPEEVPLRILVPAFVISELKTAFQIGFTIFIPFLIVDLVVASVLMSMGMMMVPPATISLPFKLMLFVLVDGW
QLLIGALAQSFYT

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 2e-33 45
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 3e-34 45
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-35 45
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-35 45
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 45
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 4e-34 45
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 3e-34 45
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 2e-33 45
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-29 43
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 1e-29 43
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 5e-28 42
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 2e-20 42
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 2e-20 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 6e-28 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 6e-28 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 6e-28 41
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 1e-20 41
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-20 41
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-31 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 5e-30 41
escR CAI43889.1 EscR protein Virulence LEE Protein 5e-30 41
escR AAC31528.1 L0049 Virulence LEE Protein 5e-30 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-30 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 7e-30 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 7e-30 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 6e-30 41
escR AAK26700.1 EscR Virulence LEE Protein 5e-30 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 6e-30 41
escR AAL57527.1 EscR Virulence LEE Protein 5e-30 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 6e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_004751609.1 flagellar biosynthesis protein VFG2494 Protein 2e-69 79
fliP YP_004751609.1 flagellar biosynthesis protein VFG2338 Protein 6e-71 76
fliP YP_004751609.1 flagellar biosynthesis protein VFG1259 Protein 7e-58 67
fliP YP_004751609.1 flagellar biosynthesis protein VFG2016 Protein 1e-52 59
fliP YP_004751609.1 flagellar biosynthesis protein VFG0044 Protein 2e-32 42
fliP YP_004751609.1 flagellar biosynthesis protein VFG0188 Protein 7e-33 42
fliP YP_004751609.1 flagellar biosynthesis protein VFG0827 Protein 3e-30 41