Gene Information

Name : hrcR (CFU_4346)
Accession : YP_004754990.1
Strain : Collimonas fungivorans Ter331
Genome accession: NC_015856
Putative virulence/resistance : Virulence
Product : type III secretion inner membrane protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 5069575 - 5070222 bp
Length : 648 bp
Strand : +
Note : -

DNA sequence : 
ATGACCGGCTCTCCTGATATTGCGTCGCTGCTGATCGCAGCGCTTGCCCTCGCCATCTTGCCGTTCGCCGCGATGGTGGT
GACGTCTTATACGAAGATCGTCGTGGTGCTCGGTCTACTCCGCAACGCTCTCGGCTTGCAGCAAGTGCCGCCGACTTCGG
TGCTGAACGGCGTTGCCATCATCATTTCATGCTTCGTGATGGCGCCGGTCGGCATGGAAGCTGTCAAGCACGCGCAGCTA
TCGAGCGAACAAACCGCCGGATCGCAGATCATGCCGTTGTTCGATGCCGCGCGCGAGCCGTTTCGCACCTTTTTGCGCAA
GCATACATCGGAACGCGAGAAGGCGTTTTTCATGCGCTCGGCCCGCCAGATATGGCCGCCGGAGCGAGCCGCGGAGCTGA
AACCGGACGACTTGATCGTACTGGCGCCGGCGTTCGTATTGAGCGAACTGACCGCGGCTTTCAAGATCGGCTTCCTGCTA
TACCTGTGTTTCATCGTGATCGATCTGGTGATCGCCAATGTACTGATGGCATTGGGATTATCCCAGGTCAATCCGAGCAA
CGTCGCGATTCCATTCAAGCTGCTGCTGTTCATATCGCTGGACGGCTGGTCCACCTTGGTCCACGGACTCATATCCACTT
ATCGGTGA

Protein sequence : 
MTGSPDIASLLIAALALAILPFAAMVVTSYTKIVVVLGLLRNALGLQQVPPTSVLNGVAIIISCFVMAPVGMEAVKHAQL
SSEQTAGSQIMPLFDAAREPFRTFLRKHTSEREKAFFMRSARQIWPPERAAELKPDDLIVLAPAFVLSELTAAFKIGFLL
YLCFIVIDLVIANVLMALGLSQVNPSNVAIPFKLLLFISLDGWSTLVHGLISTYR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-66 75
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-66 75
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-67 74
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 6e-67 74
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 7e-67 74
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 7e-67 74
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 5e-67 74
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 9e-67 74
lscR AAO18040.1 LscR Virulence TTSS locus Protein 3e-46 48
escR AAC31528.1 L0049 Virulence LEE Protein 1e-35 44
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-35 44
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 1e-35 44
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-35 44
escR AAK26700.1 EscR Virulence LEE Protein 1e-35 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-35 44
escR AAL57527.1 EscR Virulence LEE Protein 1e-35 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-35 44
escR CAC81847.1 EscR protein Virulence LEE II Protein 1e-35 44
escR CAI43889.1 EscR protein Virulence LEE Protein 1e-35 44
escR AAC38369.1 EscR Virulence LEE Protein 1e-34 44
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-35 44
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-35 43
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 4e-38 42
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-36 42
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 6e-36 42
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 3e-32 41
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 3e-32 41
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 3e-32 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-35 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 8e-35 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 8e-35 41
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 3e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcR YP_004754990.1 type III secretion inner membrane protein VFG0188 Protein 1e-47 50
hrcR YP_004754990.1 type III secretion inner membrane protein VFG0394 Protein 4e-45 49
hrcR YP_004754990.1 type III secretion inner membrane protein VFG0715 Protein 5e-35 44
hrcR YP_004754990.1 type III secretion inner membrane protein VFG0827 Protein 6e-36 44
hrcR YP_004754990.1 type III secretion inner membrane protein VFG0044 Protein 2e-43 43
hrcR YP_004754990.1 type III secretion inner membrane protein VFG1012 Protein 5e-33 43
hrcR YP_004754990.1 type III secretion inner membrane protein VFG2338 Protein 3e-31 42
hrcR YP_004754990.1 type III secretion inner membrane protein VFG0519 Protein 1e-35 41