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Name : hrcV (CFU_4343) Accession : YP_004754987.1 Strain : Collimonas fungivorans Ter331 Genome accession: NC_015856 Putative virulence/resistance : Virulence Product : type III secretion inner membrane channel protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 5065905 - 5067842 bp Length : 1938 bp Strand : + Note : - DNA sequence : TTGAAGGAGATTTACATGAAATCGTCGCGCCTCTTCAATATCAGCGGCGAAGTCGGCATCGTAGCGTTGGTGATGGCAGT CATCGCACTGATGATCCTGCCTTTGCCCACGTTCCTGATCGATATGCTGCTGGGCCTGAATATCACCATCAGCATCGTGC TGCTGATGGTGACAATGTATATTCCCAGCGCCACATCGCTGTCGGCTTTTCCATCCCTGCTGTTGTTTACTACCTTGTTC CGCCTGTCGCTTAACATCGCCTCGACAAAATCGATCTTGCTTAACGCCGAAGCCGGCCACATCATCGAGAGTTTCGGCGA ACTGGTGGTCGGCGGCAACCTGGTAGTCGGGCTGGTGGTGTTCCTGATCATCGCGACCGTGCAATTCATCGTGATCGCCA AAGGCTCGGAACGGGTAGCGGAGGTGGGCGCGCGTTTCACTCTGGATGCAATGCCGGGCAAGCAGATGAGCATTGACGCC GACGTCAAGGCCGGCAATATTTCCGTCGACGACGCCAGGCAACGGCGTGCTTTGCTGGCCATCGAGAGCCAGCTGCATGG CGGCATGGACGGCGCGATGAAATTCGTCAAGGGAGATGCGATCGCCGGCCTGGTCATCACCATGGTTAACATCCTCGCCG GCATGGTGATCGGCGTCAGCTACCATGGCATGAGCGCAGGCGAAGCTGCCAACCGCTTTTCCGTGCTTTCCATCGGCGAT GCGATGGTTTCGCAAATTCCCTCCTTGCTGATCTCGGTCGCGGCCGGCATCTTGATCACGCGCGTGGCCGACGAACATAG CCGGCCGCGCTCGCTAGGCATGGATATCGCATCGCAGCTGTCAACCAATTCGAACGCCTTGTTCAGCGCTTCGGCCATGT TATGCGGGTTCGCATTGGTGCCTGGCTTTCCGACCACCTTGTTCCTGGTGTTGGCGGCTGCCATCTTCGCCGGCGGCTAT AGCTTGCGACGCAAGCAGCAGCAATCCAAGCCCGATTCCGGCACCGAGCTCTCCGCTCTGCTCACCGATGGCGTCAAAGG CGGCGCGCCCAGCATTGCGCAGCACGCTCCGGCGTTCGCCGTTCCGTTATCCATACGCCTATCGAAAAAGCTCAGCGGCC GGCTCGCCGAGGCGGCCTTGAACCAGGCCCTGAACGACATACGGCTGCGGCTGGTGGAAGAACTCGGCCTGCCTTTTCCG CGCACCGCCGTATGGACCGCCCACGACCTGCCCGGTCTGTCATACCAGATCCTGCTGCAAGAGGTGCCGCTGGCGCCGGT AGAGATGCCGGAGTCGGTCAGCCAGCGCGAAAAGGCGTTGGCAGACGATGTGTTCGATTCGCTGCGGCGTGAAGCGCATC TCTTCGTCGGGCTGCAAGAAACGCAATGGATACTGGACCGCGTCGGCGCCGAGTATCCAGGCCTGGTCGCCGAGGTGCAG AAAGTCTCGACCGTGCCGAAGATAGCGGAAGTGTTCAGACGCCTTCTCGAAGAGCAGGTACCGATCCGGAATATCCGGGC GATCCTGGAAAGCCTGGTTGCATGGGGCGCCAAGGAAAAGGATGTTCTGATGCTGACCGAATACGTGCGCGGCGATCTGG GCCGCTTCATCGCCCACCGGGCGACGGCAGGCACCGGAAAAATGCAGGCGATCATGCTCGAAGCCGATGTCGAACAGACT ATTCGCCAGGCCATCAAGCCCACTCCGGCCGGCAATTTCCTGACACTTGAACCGCAGCAAATCGATGCCCTGCTGGAGTC GGTCCAAAGCGCCATCGGCAACGAACCGGCGGCTGGCCTCGCGGTCGTTACCGCAATGGATATCCGGCGCTACTTCCGGC GCATGATCGAACAAGGCTTTCCGGCGCTGCAGGTGTATTCATTCCAGGAACTGGGAGCGGATGTCGAGCTGCAGCCGGTC GGCGTGGTCAATCTCTAG Protein sequence : MKEIYMKSSRLFNISGEVGIVALVMAVIALMILPLPTFLIDMLLGLNITISIVLLMVTMYIPSATSLSAFPSLLLFTTLF RLSLNIASTKSILLNAEAGHIIESFGELVVGGNLVVGLVVFLIIATVQFIVIAKGSERVAEVGARFTLDAMPGKQMSIDA DVKAGNISVDDARQRRALLAIESQLHGGMDGAMKFVKGDAIAGLVITMVNILAGMVIGVSYHGMSAGEAANRFSVLSIGD AMVSQIPSLLISVAAGILITRVADEHSRPRSLGMDIASQLSTNSNALFSASAMLCGFALVPGFPTTLFLVLAAAIFAGGY SLRRKQQQSKPDSGTELSALLTDGVKGGAPSIAQHAPAFAVPLSIRLSKKLSGRLAEAALNQALNDIRLRLVEELGLPFP RTAVWTAHDLPGLSYQILLQEVPLAPVEMPESVSQREKALADDVFDSLRREAHLFVGLQETQWILDRVGAEYPGLVAEVQ KVSTVPKIAEVFRRLLEEQVPIRNIRAILESLVAWGAKEKDVLMLTEYVRGDLGRFIAHRATAGTGKMQAIMLEADVEQT IRQAIKPTPAGNFLTLEPQQIDALLESVQSAIGNEPAAGLAVVTAMDIRRYFRRMIEQGFPALQVYSFQELGADVELQPV GVVNL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-178 | 66 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-178 | 66 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-174 | 65 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 1e-174 | 65 |
| hrcV | BAB07859.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-172 | 65 |
| hrcV | YP_198723.1 | protein HrcV | Virulence | Hrp PAI | Protein | 2e-172 | 65 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 4e-174 | 65 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 5e-107 | 42 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | YP_004754987.1 | type III secretion inner membrane channel protein | VFG0064 | Protein | 3e-115 | 45 |
| hrcV | YP_004754987.1 | type III secretion inner membrane channel protein | VFG0384 | Protein | 3e-108 | 42 |
| hrcV | YP_004754987.1 | type III secretion inner membrane channel protein | VFG0198 | Protein | 1e-97 | 42 |
