Gene Information

Name : CFU_1244 (CFU_1244)
Accession : YP_004751899.1
Strain : Collimonas fungivorans Ter331
Genome accession: NC_015856
Putative virulence/resistance : Virulence
Product : DNA-binding heavy metal response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1455351 - 1456040 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGAAAATACTGATCGTCGAAGATGAACTGAAGACGGCCGACTATCTGTGCAAGGGTCTGACCGAACAGGGTTGCGCCGT
CGATGTCGCGCATAACGGCGTCGACGGCCAGCACCTGGCCTTGCAGCACGATTACGACGTCATCGTGCTCGACGTCATGC
TGCCCGGCATAGACGGTTTTACGGTGCTGCACGCCTTGCGCGCGATCAAGCAGACCCCGGTCATCATGCTGACCGCGCGC
GACCGGGTGGAAGACCGCATCAAGGGCCTGCAAGGCGGCGCCGACGATTACCTGGTGAAACCGTTTTCCTTCCTCGAGCT
GCTGGCGCGCCTGCAGGCGCTGACCCGGCGCGGCCGCGCGTTCGAGCCGGCGCAGCTGCGGATTGCCGACCTGCAGATCG
ACCTGATCAGCCGCAAGGCTTACCGGGCCAATGTCCGCATCGACCTTACCGCCAAGGAGTTTTCGCTGCTGGCGGTGCTG
GCGCGGCGCCAGGGCGAGATCCTGTCCAAGACCGCGATCGCCGAGCTGGTGTGGGACATGAATTTCGACAGCAACACCAA
TGTCGTCGAAGTCGCCATCAAGCGCTTGCGCGCCAAGATCGACACGCCGTTCAGCCCCAAGCTGCTGCACACGATACGCG
GCATGGGTTATGTGCTGGAACCGCGCTCTCCTCAGGAGAGCAGCGAATGA

Protein sequence : 
MKILIVEDELKTADYLCKGLTEQGCAVDVAHNGVDGQHLALQHDYDVIVLDVMLPGIDGFTVLHALRAIKQTPVIMLTAR
DRVEDRIKGLQGGADDYLVKPFSFLELLARLQALTRRGRAFEPAQLRIADLQIDLISRKAYRANVRIDLTAKEFSLLAVL
ARRQGEILSKTAIAELVWDMNFDSNTNVVEVAIKRLRAKIDTPFSPKLLHTIRGMGYVLEPRSPQESSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-55 57
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-54 55

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0197 Protein 5e-63 61
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0083 Protein 3e-59 59
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0125 Protein 1e-64 59
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0638 Protein 3e-53 56
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0111 Protein 2e-61 56
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0347 Protein 2e-56 55
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator BAC0308 Protein 6e-54 53
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_010079.5776364.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_002952.2859858.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_007622.3794948.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_003923.1003417.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_013450.8614146.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_002951.3238224.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_007793.3914065.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator NC_002758.1121390.p0 Protein 4e-33 41
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator HE999704.1.gene2815. Protein 2e-27 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator VFG0596 Protein 4e-56 57
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator VFG1389 Protein 3e-37 44
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator VFG1386 Protein 6e-33 43
CFU_1244 YP_004751899.1 DNA-binding heavy metal response regulator VFG1390 Protein 5e-40 41