Gene Information

Name : Atc_0394 (Atc_0394)
Accession : YP_004747745.1
Strain : Acidithiobacillus caldus SM-1
Genome accession: NC_015850
Putative virulence/resistance : Virulence
Product : sensory histidine kinase YfhA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 404183 - 405583 bp
Length : 1401 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTCGAAAGTCCCTGGGTAGCGACCCTGGCCACATCTGCATCATCGACGACGATGCCGATTTCCTGCGCCTTCTCGG
CCTCTGGCTGGAGAGTGAAGGGCATAAGGTACAGGCCTTCAGCACGCCGGTGCAGGCGGTCAAGGCCATGGAGCGAGAAC
TTCCGGATCTGGTCATCACCGACCTGCGCATGCCCGAAATGGATGGCATGGAAGTCCTCGAAGCGGTGCAGGAGCTGGAT
CCCGAGTTGCCGGTGATCCTCCTCACCGCCCACGGCAGCATCCCCAACGCCGTCGCCGCCATGCGTGCGCAAGCCTTTGG
CTATCTTGGCAAACCCTTCAGCAGTGAGGAGCTGGAATCCCTGGTCGCCGCCGCCCTGCGCCAGCGTCAGGCAAGTCGCG
AAACCAGCCGCCTGCGCGCCACGCTGAAGGATCTGGCCGGGCAGATGATCCTGCACCGCAGTCCCGTCATGGCCAAGCTC
GTGGATGAACTGACCCGCGTTGCCCACTCCCAGGCCAGCGTCTTCCTCACGGGCGAGAGCGGCTCGGGCAAGGAGCGGGT
GGCGCGCGCCATCCACGCCGCCAGCCCCCGCGCCCAGGGCCCATTCGTCGCCGTCAACTGCGGCGCCATCGTCGCCGATC
TGGCCGAGAGCGAGCTCTTCGGGCACGTCAAGGGGGCCTTCACCGGCGCCAGCCAGGATCACCCCGGTCTCATCCGCGCC
GCCGACGGCGGCACCCTGTTTCTGGACGAGATTGCCGATCTTCCCCTGAGCCTGCAGGTCAAGCTCCTGCGCGTTTTGCA
AGAGGGCACCCTGCGACCGGTGGGATCGCGGGAGGAGTATCGCGTGGACATCCGCGTCATCAGCGCCACGCACCAGGACA
TCTGCGCCCTGACGGCCAGCGGCGCCTTTCGCGAGGATCTGTACTACCGCCTCCACGTGATTCCACTGCGGGTGCCGAGC
CTTGCCGAACGCCCCGAGGACATCCTGCTCTTGGCCCAGCACTTTCTCGATCGGGAGATCGCCCGCCTGCGTCGCCCCAT
CCAAGGATTCAGCCCGGAGGCCCTGGACAAGCTGATCTGCCGCCCCTGGCCCGGCAATGTCCGCGAACTGGAGAATGCCG
TCACCCTGGCCGCAGCCCTGACGGAAAAAGGCTGGGTGGCCGCCGAAACCATTCCCGACCCCAGTCGCGCCGGCGGACGC
AGTGCCTTCCCGCCTTTGCAAGATGCCAAAGCGGCCTTTGAACGCGGCTATCTCGAGAACCTGCTGCGCGCAACGGATGG
CAACATCTCGCGGGCGGCGCGCATTGCCGGTCGGCACCGCACGGACCTCTACAAGCTGATGCGCAAGCACGAACTCACCC
CGCAGGAGTTCAAGAATCAGGGCGACGAGGAAGCGCCGTGA

Protein sequence : 
MSRKSLGSDPGHICIIDDDADFLRLLGLWLESEGHKVQAFSTPVQAVKAMERELPDLVITDLRMPEMDGMEVLEAVQELD
PELPVILLTAHGSIPNAVAAMRAQAFGYLGKPFSSEELESLVAAALRQRQASRETSRLRATLKDLAGQMILHRSPVMAKL
VDELTRVAHSQASVFLTGESGSGKERVARAIHAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRA
ADGGTLFLDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTASGAFREDLYYRLHVIPLRVPS
LAERPEDILLLAQHFLDREIARLRRPIQGFSPEALDKLICRPWPGNVRELENAVTLAAALTEKGWVAAETIPDPSRAGGR
SAFPPLQDAKAAFERGYLENLLRATDGNISRAARIAGRHRTDLYKLMRKHELTPQEFKNQGDEEAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 6e-66 42
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 6e-66 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_0394 YP_004747745.1 sensory histidine kinase YfhA BAC0467 Protein 8e-70 44
Atc_0394 YP_004747745.1 sensory histidine kinase YfhA BAC0089 Protein 9e-86 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_0394 YP_004747745.1 sensory histidine kinase YfhA VFG1249 Protein 8e-61 44
Atc_0394 YP_004747745.1 sensory histidine kinase YfhA VFG1214 Protein 3e-69 43