Gene Information

Name : Atc_2861 (Atc_2861)
Accession : YP_004750209.1
Strain : Acidithiobacillus caldus SM-1
Genome accession: NC_015850
Putative virulence/resistance : Virulence
Product : two-component response regulator PilR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 2912932 - 2914299 bp
Length : 1368 bp
Strand : +
Note : -

DNA sequence : 
GTGAATGCCAGTGTTCGGCAAAGGAAACGGGCGCTCATCGTCGACGATGAGCCCACCATCGTGGAACTGCTGGGTATCAC
CTTGGAAGGCATGGGGGTCGAGGTCTTGGCTTGCCATAGCCTGGCCGAAGCCTTTGCCGCCCTGGGCAAGGGCCCACCAT
CGCTGTGCCTGACGGATCTGCGCCTGGGCGACGGCTCGGGCATGCAACTCCTGCACAAGGTCCGCGAACTCTACCCGCAG
GTGCCGGTGGCGGTGATCACCGCCTACGCCTCGGCGGAGGGCGCGGTGGAAGCCATGCGCGCCGGCGCCTTCGACTTCAT
GACCAAGCCCATAGAACTGGCACGTCTGCGCCGCCTGGTGAGCGAGGCCATCGCCCTTGGGGAGTTGCCCCGGGAGAGCG
TAGATCTCAGCGAGCGCCTGGTGGGCGAAAGCCCCGGCATGGTGGCCCTGCGCGAGCGCGTTCGCCTGCTGGGACGCAGC
AATGCACCGGTGCATATTCGCGGTGAATCGGGCACCGGCAAGGAACTGGTGGCCCGCGCCATACACGATGCAAGCCCACG
TCGGGAAAAGGCATTCATTGCCGTCAACTGCGGCGCCATCCCGGAAAATCTCATGGAGAGCGAGTTTTTTGGTGCCGAAA
AAGGTGCCTATTCCGGCGCCGTGCAACGGCGGGAAGGACTCTTCGTGGCAGCCAATGGTGGCACGCTCTTTCTCGACGAA
ATAGCCGAACTGCCGCTGACCACGCAGGTGAAACTGCTGCGGGTGCTGCAAGAGCGGGTGGTGCGACCGCTGGGTGGCCT
GCGCGAGCAGAGTATCGATATCCGCCTGATCTGTGCCACCCACCGCGATCTGCGCCGGATGGTGGAGGAGGGCACTTTTC
GCGAAGACCTCTTCTACCGCATCAATGTCGTACCCATAGAGATTCCGCCCCTGCGCGAACGCCGCGAGGACATCCCGCTA
CTGGCGCAAACGCTACTGCAGCGCCTCTGCCAGCGGCACGGACGTCCCCCGGCGAACCTCGCCCCCGCTGCGCTGGCCTG
GCTGTCCAACCGCGATTTCCCGGGCAACGTACGTGAGTTGGAGAACCTCCTGGAGCGGGCGCTCGCCCTACAGTCACAGC
CACTGCTGCACCGGGAAGATCTGGAGCCCACGGCGGAGCTCGCGGTGGCGCGGGCGCCACTGCCCGCTGCCGCACCCGCC
GCGGACACGGCCCTCACCAAGCGCCTGGCCGAGGCAGAGTGGCGCTATCTGGCCGACCTGCAGATCCGCCTTGGCGATCG
ACCCGAGGAAATGGCAAAGGCCCTGGGCATAAGCCTACAATCGCTCCATCTGCGTCTCGCCCGGGGAGGATCGAATCGTG
ATTCCTGA

Protein sequence : 
MNASVRQRKRALIVDDEPTIVELLGITLEGMGVEVLACHSLAEAFAALGKGPPSLCLTDLRLGDGSGMQLLHKVRELYPQ
VPVAVITAYASAEGAVEAMRAGAFDFMTKPIELARLRRLVSEAIALGELPRESVDLSERLVGESPGMVALRERVRLLGRS
NAPVHIRGESGTGKELVARAIHDASPRREKAFIAVNCGAIPENLMESEFFGAEKGAYSGAVQRREGLFVAANGGTLFLDE
IAELPLTTQVKLLRVLQERVVRPLGGLREQSIDIRLICATHRDLRRMVEEGTFREDLFYRINVVPIEIPPLRERREDIPL
LAQTLLQRLCQRHGRPPANLAPAALAWLSNRDFPGNVRELENLLERALALQSQPLLHREDLEPTAELAVARAPLPAAAPA
ADTALTKRLAEAEWRYLADLQIRLGDRPEEMAKALGISLQSLHLRLARGGSNRDS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-68 46
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-68 46

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_2861 YP_004750209.1 two-component response regulator PilR BAC0467 Protein 5e-65 47
Atc_2861 YP_004750209.1 two-component response regulator PilR BAC0089 Protein 4e-60 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_2861 YP_004750209.1 two-component response regulator PilR VFG1214 Protein 8e-91 55
Atc_2861 YP_004750209.1 two-component response regulator PilR VFG1248 Protein 3e-51 41