Gene Information

Name : Atc_0262 (Atc_0262)
Accession : YP_004747613.1
Strain : Acidithiobacillus caldus SM-1
Genome accession: NC_015850
Putative virulence/resistance : Virulence
Product : sensory histidine kinase YfhA
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 279238 - 280593 bp
Length : 1356 bp
Strand : -
Note : -

DNA sequence : 
ATGGACAAGGGAAAGATCCTTCTCGTAGATGACGATGCCGATCTGCTGCGGCTGCTGTCTTTGCGCATGAAAAGTGCAGG
CTACGCCATCCTCACTGCCGCCAATGGCAGCGAGGCCCTGTCGGTGCTTGCCATGGAACATCCGGGCCTGGTCATCACCG
ACCTCAAGATGGATGAGATGGACGGCATGGCCCTGCTGGATGCCATCCGCCGCGATTATCCCACCCTGCCGGTGATCATC
CTGACGGCGCACGGCTCCATCCCCGATGCCCTCGTCGCCGCCGATCAGGGGGTTTTCGCCTTTCTGACCAAGCCCTTCGA
CGGCAAGGATCTGATGGCTCAGGTGGAACGCGCCTTCAATCTCACGGCGGCCAGTACCGGCAGCCGCAAGACCTCGGACC
TAGGTTTCGAGCGTATCCTCACCCGCAGCCCGCGCATGCAGGCGGTGCTGGATCAGGCGCGACTGGTGGCGGCATCGGAC
GCCAGCGTCTTCATTCACGGTGCCAGCGGCACGGGTAAGGAACTCCTGGCCCAGGCCATTCACCAGTCTAGCCCGCGCCG
CAACAAGCCCTTCGTCGCCGTCAATTGCGGCGCCTTTCCCGAGCAACTGCTGGAGTCGGAACTCTTCGGCCACAAGAAGG
GGGCCTTCACCGGGGCGGCCAGCAATCACGTGGGCCTCTTTCAGGCGGCCGATGGCGGGACCCTGTTTCTGGACGAAATC
GGCGACATGCCTCTGGCGCTGCAGGTCAAGCTCTTGCGGGCACTGCAGGAGCGCGTGGTACGACCCGTGGGAGCCACGGA
GAGTATTCCGGTGGACGTTCGGGTAATCTCGGCAAGTCACCGCGATCTCGAAAAGGAAATGGCGGAACGGCGCTTTCGCG
ACGACCTCTACTATCGTCTGTGCGTGGTTACGCTGGAGTTGCCGTCCCTGGCGGAACGGCCCGAAGATATCCCCCTGCTG
GCGGAGTTCTTTCTCCGCGACACCGCCAGCAAGAACCGTAAGGACGTGCGCGGCATTGCTCCCGAGGCCATGGAACTCCT
GGTGGCTGCTCCCTGGCCCGGTAACGTCCGCCAGTTGGCCAACGTCATCGAGCAGGCCGTGGTCCTGTCCACCACACCCC
GTATCGGTGCACCCCTCATCCGCCACGCCCTGCGCGACCGCGAGGGAGAGGTGCTTCCCCTGGCCGATGCCAAGGGTCGT
TTCGAGATGAATTACCTCATCCAGATCATGCGCATGACCCGTGGCAATGTGAGCCAGGCGGCACAGCTGGCGCAACGCAA
CCGCACCGAATTCTACCGCCTGCTGCGGCGCTACCACCTGGATCCGGCAGCCTTCAAGGAAGAAGATTCGGACTGA

Protein sequence : 
MDKGKILLVDDDADLLRLLSLRMKSAGYAILTAANGSEALSVLAMEHPGLVITDLKMDEMDGMALLDAIRRDYPTLPVII
LTAHGSIPDALVAADQGVFAFLTKPFDGKDLMAQVERAFNLTAASTGSRKTSDLGFERILTRSPRMQAVLDQARLVAASD
ASVFIHGASGTGKELLAQAIHQSSPRRNKPFVAVNCGAFPEQLLESELFGHKKGAFTGAASNHVGLFQAADGGTLFLDEI
GDMPLALQVKLLRALQERVVRPVGATESIPVDVRVISASHRDLEKEMAERRFRDDLYYRLCVVTLELPSLAERPEDIPLL
AEFFLRDTASKNRKDVRGIAPEAMELLVAAPWPGNVRQLANVIEQAVVLSTTPRIGAPLIRHALRDREGEVLPLADAKGR
FEMNYLIQIMRMTRGNVSQAAQLAQRNRTEFYRLLRRYHLDPAAFKEEDSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 2e-59 41
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 2e-59 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_0262 YP_004747613.1 sensory histidine kinase YfhA BAC0467 Protein 1e-79 51
Atc_0262 YP_004747613.1 sensory histidine kinase YfhA BAC0089 Protein 1e-86 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_0262 YP_004747613.1 sensory histidine kinase YfhA VFG1249 Protein 2e-70 47
Atc_0262 YP_004747613.1 sensory histidine kinase YfhA VFG1214 Protein 3e-67 46