Gene Information

Name : Atc_1480 (Atc_1480)
Accession : YP_004748829.1
Strain : Acidithiobacillus caldus SM-1
Genome accession: NC_015850
Putative virulence/resistance : Virulence
Product : flagellar regulatory protein fleQ
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 1518163 - 1519140 bp
Length : 978 bp
Strand : +
Note : -

DNA sequence : 
ATGCGCGAGGTCACGCGCGTCCTCGGCAAGGTGGCACAGAGCGACAGTACGGTACTTCTTCTGGGTGAGTCGGGCACTAC
TGGGAAGGAGGTAGTCGCGCAGTGTCTGCACCAGCATTCGAGTCGCCGCAACGGTCCCTTTGTCGCCGTCAATTGCGGCG
CCATCCCCGCTGAACTCATGGAGAGCGAGCTCTTCGGACACGAGAAGGGCGCCTTCACGGGGGCTCTGGTGGCGCGCAAG
GGACGTTTCGAGCTTGCCGAGGGGGGCACGCTCTTTCTCGATGAAGTGGCGGAGATGAGCCCGCAGATGCAGGTAAAACT
GCTGCGCGTGCTGCAGGAGCGGCGCTTTGAGCGCGTCGGTGGGTCGCGCAGCCTCCACGCCAACGTGCGCATCATCGCCG
CAACCCACCGTAATTTGGAGGACCGGATACGAGAGAATCTTTTCCGGGAGGATTTGTACTACCGTCTGAATGTGTTCCCT
GTGGATCTACCGCCGCTGCGCTGTCGCGAAAACGACGTGCGTCTCTTGATGGAATTTTTCCTCAAGCGCCAGGCGGCCGA
GACGGGGAACCTGGAGGTCCGTTTGACGGAGGCGGCCTGGCGTGTGTTGCGCGATTACCATTGGCCAGGCAACGTGCGCG
AATTGCAGAATCTGGCGGAGCGTCTGAGCATTCTCCATGCTGGTGAAGAGATCGATGTGGAGCAGTTGCCAGAGCGTCTA
CGCCGCCATGGTGCGGCGAGCCAGGCAGAGCAGGAGCAGCAGAGTCTGAGGGCGATATGGTCCGAGGGATTCTCCCCTCA
GCCGGAACTCCCCTTCGATTTGAAGAAGCATATGGAAGCAGTGGAAAAGGAATTTTTGCTGCGCGCCCTGGATGAGTGCG
ACCAGGTGGTGGCGCGGGCTGCGGAGCGGCTGGGTCTGCGACGCACGACCATGGTGGAAAAGCTCAAGAAATATGCCCTA
TTGCCGGGGCGTTTCTGA

Protein sequence : 
MREVTRVLGKVAQSDSTVLLLGESGTTGKEVVAQCLHQHSSRRNGPFVAVNCGAIPAELMESELFGHEKGAFTGALVARK
GRFELAEGGTLFLDEVAEMSPQMQVKLLRVLQERRFERVGGSRSLHANVRIIAATHRNLEDRIRENLFREDLYYRLNVFP
VDLPPLRCRENDVRLLMEFFLKRQAAETGNLEVRLTEAAWRVLRDYHWPGNVRELQNLAERLSILHAGEEIDVEQLPERL
RRHGAASQAEQEQQSLRAIWSEGFSPQPELPFDLKKHMEAVEKEFLLRALDECDQVVARAAERLGLRRTTMVEKLKKYAL
LPGRF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpS AAT96161.1 HrpS Virulence T-PAI Protein 2e-36 44
hrpS AAT96215.1 HrpS Virulence T-PAI Protein 2e-36 44
hrpRS ABA47311.1 HrpRS Virulence S-PAI Protein 1e-32 43
hrpR NP_791206.1 type III transcriptional regulator HrpR Virulence Hrp PAI Protein 2e-36 42
hrpR AAC34752.1 HrpR Virulence Hrp PAI Protein 2e-36 42
hrpR AAC35799.1 transcriptional regulator Virulence Hrp PAI Protein 3e-33 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_1480 YP_004748829.1 flagellar regulatory protein fleQ BAC0467 Protein 3e-51 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Atc_1480 YP_004748829.1 flagellar regulatory protein fleQ VFG1214 Protein 7e-53 44