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Name : GYY_04440 (GYY_04440) Accession : YP_004742506.1 Strain : Methanococcus maripaludis X1 Genome accession: NC_015847 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 820692 - 823790 bp Length : 3099 bp Strand : + Note : COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases DNA sequence : ATGTCTAATTTATGTGAAGATACGGTTGAACAGGGGACTCTTGAGCTTTTAAAGAGTATTGGATATGAAATAATTTCAGG TCCTGAAATTGCGCCTGATGGAACTTCTCCTGAACGTAAAGATTATTCTGAAGTTGTGCTTGTTTCTCGGCTTAGGGATG CAATTTCAAGAATAAATCCAAAAGTTCCAGTGGAAGCTCGAGAAGATGCACTTCGAAAAGTCTTGAGGCTTGAAAATCCA AATTTACTCATGAATAACGAGAAGTTTCACGAGTTTATATTTAAGGGAATTGATGTAGAATACCCAATTGATGGAAGAGT TAAGGGAGATAAGGTATATTTACTCGATAAAGACCCTTTGAAAAACGAATTTGTTGCAGTAAATCAATTTACAATCATTC AGAATAATAAAAACAGGCGGCCAGATATTGTTATATTTGTAAACGGGCTTCCGCTTTCAGTTATTGAACTTAAAAATCCT ACAAAAGAAGATGCTACGATATGGAGTGCTTATAATCAGATTCAAACGTATAAATCGGAAATTTCAGAACTTTTTAAGTA TAACGAGCTCATACTAATTTCTGATGGTACGGAATCGCGAATAGGTACGCTTTCTTCAAATAAAGAGTGGTTTTTACCTT GGAAATCAATTGATGGAACTTCTGAAATTAATAATGGGGTAAGCCAGCTTAAGATTTCAATTCTTGGAATGTTTGATAAA ACGCGGTTTATTGACATAATAAAGAATTTTATTGTTTTTAAAAAAGATGGAAAAGACATTATAAAAGTTATTGCAGGATA CCACCAGTATTTTGCAGCAAACCGTGCAATTGAAAAAACTATTGAAGCAGTTTCTGGAAATCGCCGGTGCGGTGTTGTAT GGCACACGCAAGGGTCTGGGAAAAGTCTTACAATGGCTTTTTATGCTGGAAAACTTGCGATTACTCCTGAACTTAGAAAC CCTACAATTGTAGTTGTAACTGACAGGAATGACCTTGACGACCAGCTCTTTGGAACGTTTGCGTCATGTATTGATGTATT AAAACAGACTCCGGTTCAGGCAAAAAATGCAGAGGACTTAAAAGAACAGTTAAAGGTTGTATCGGGTGGAGTAATCTTTA CAACGATGCAGAAGTTTTCTGTAGATGAACTTAATGCAAAATATCCGATGCTTTCTGATCGAGAAAACATAATCGTAATG GCTGATGAAGCACACAGGAGCCAGTACGGTCTTAAAGCAAAATCAGTTGCGAGAAACGGTGAAGTTGGCATAACTTACGG GTTTGCTAAATATTTACGTGATGCCCTACCAAATGCTTCATTTATTGGATTTACAGGAACTCCGATAGACTTTGAAGATA AAAGCACCCGTTCGATATTTGGTGAATATATCGATATTTACGATGTAAGACGGGCTGTTGCTGATGGTAGAACTGTAAAA ATCTACTATGAAAGCCGTGTTGCAAAAATCGGAATTGAAAACGACGTTCTTGCTAAACTTGACGCAGAATTTGAGGAAGT TACAGAATTTGAAGAAAATTATAAAAAAGAGAAATTAAAGGGCAAATGGGCACAGCTTGAAGCGATTGTTGGAAGCAATG ACAGGATTTCAAAAGTTGCACAGGATATTGTCAATCACTTTGAAAAGCGGGAAGAAACACTTACTGGAAAAGCAATTGTT GTATGCATGAGCAGGAGAATTTGCGTTGATCTGTATGACGAAATTATTCGTTTAAGGCCTGAATGGCATAATGACGATGA CAAGCTTGGTGTTTTAAAGGTTATAATGACAGGTTCTGCGGCTGACGGTACAGAATGGCAAAAACACATAAGGACAAAAG GAAAACGAAAAGAGCTTGCTGAACACTTTAAAGATTCTGAAAGTGAATTTAAAATTGCGATTGTTCGTGATATGTGGCTT ACTGGCTTTGATGTTCCGTGTTTGCACACACTTTATATCGATAAGCCTATGAAAGGGCACGGTTTAATGCAGGCGATTGC AAGGGTAAACAGGGTATTTAGAGATAAGCCTGGAGGACTTGTTGTTGACTACATCGGAATTGCACAGGATTTAAAGTATG CGCTTGTGAATTACACTTCAAATGGCGGTACTGGGAAACCAACGTATGATATAGAAGATGCAGTAAACCTCATGAAATCA AAATACGAAGCTATGAAAGATTTCTTTTATGGCCATGACTACTCAAAATTCTTTAATGGAACAAATATTGAAAAAATGGA TGTAATTCCAGAAACTTTAGAATTTATCCTTAATCAGCCTGATGGGAAAAAGCGGTTTGTTAAACTTGCGCTTGAACTTA TAAAGTCATACGCTCTATCCCTGCCGCATGAAGAAGCCATAAAAATCCGTGAGGAAGTCGCGTTCTTTACAGGGGTTAAA GCGGCACTTTATAAAAATACGGAAATTTCAGGAAAACCAGAAGATGAACTAAACAGCGCGATAAAACAGATTGTATCTGG TGCAGTTCGTACTGATGGAATAATCGATGTATTTGGTGAAGCAGGACTTGAAAAACCCGATATTTCGATTCTGTCTGAAC AATTCCTCGAAGATGTAAAAAACATGAAATATAAAAATTTAGCACTTGAAACGCTTAAAAAAATATTAAATGACGAAATA AGGGCTAAATTTAAAAACAATCTTTTGCAGGAAAAGAAATTTTCAGAGATGATTGAAAACGCGATTAAAAGATACCACAA TAAAGCGATAGATTCGGCGGCAGTTATTCAAGAACTCATAGCAATTGCAAAGGAAATTGAAAACGCTAAAAGAAGAGGGG AAGAATTACATTTAACTGAAGAAGAGCTCGCATTTTACGATGCGTTATCAGACAACGATTCAGCAAAGGAAATTTTAGGA ACAGAAGTTTTAAGTGAAATTGCAAGGGAACTGACTGACACTTTGAGGAAAAACATTTCCATTGACTGGGAAGTTAGGGA AACTGTAAGGGCGACTTTAAGGGTCAGGGTTAAACGACTTCTTAAAAAATACGGGTATCCTCCAGACAAAGCACAGATTG CAGCTGACCTTGTTTTAAAACAGGCTGAAACAATTTCTAAAGAATGGATGAATGCTTAA Protein sequence : MSNLCEDTVEQGTLELLKSIGYEIISGPEIAPDGTSPERKDYSEVVLVSRLRDAISRINPKVPVEAREDALRKVLRLENP NLLMNNEKFHEFIFKGIDVEYPIDGRVKGDKVYLLDKDPLKNEFVAVNQFTIIQNNKNRRPDIVIFVNGLPLSVIELKNP TKEDATIWSAYNQIQTYKSEISELFKYNELILISDGTESRIGTLSSNKEWFLPWKSIDGTSEINNGVSQLKISILGMFDK TRFIDIIKNFIVFKKDGKDIIKVIAGYHQYFAANRAIEKTIEAVSGNRRCGVVWHTQGSGKSLTMAFYAGKLAITPELRN PTIVVVTDRNDLDDQLFGTFASCIDVLKQTPVQAKNAEDLKEQLKVVSGGVIFTTMQKFSVDELNAKYPMLSDRENIIVM ADEAHRSQYGLKAKSVARNGEVGITYGFAKYLRDALPNASFIGFTGTPIDFEDKSTRSIFGEYIDIYDVRRAVADGRTVK IYYESRVAKIGIENDVLAKLDAEFEEVTEFEENYKKEKLKGKWAQLEAIVGSNDRISKVAQDIVNHFEKREETLTGKAIV VCMSRRICVDLYDEIIRLRPEWHNDDDKLGVLKVIMTGSAADGTEWQKHIRTKGKRKELAEHFKDSESEFKIAIVRDMWL TGFDVPCLHTLYIDKPMKGHGLMQAIARVNRVFRDKPGGLVVDYIGIAQDLKYALVNYTSNGGTGKPTYDIEDAVNLMKS KYEAMKDFFYGHDYSKFFNGTNIEKMDVIPETLEFILNQPDGKKRFVKLALELIKSYALSLPHEEAIKIREEVAFFTGVK AALYKNTEISGKPEDELNSAIKQIVSGAVRTDGIIDVFGEAGLEKPDISILSEQFLEDVKNMKYKNLALETLKKILNDEI RAKFKNNLLQEKKFSEMIENAIKRYHNKAIDSAAVIQELIAIAKEIENAKRRGEELHLTEEELAFYDALSDNDSAKEILG TEVLSEIARELTDTLRKNISIDWEVRETVRATLRVRVKRLLKKYGYPPDKAQIAADLVLKQAETISKEWMNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 48 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 48 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 47 |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 47 |
