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Name : lysS (zobellia_953) Accession : YP_004735402.1 Strain : Zobellia galactanivorans DsiJT Genome accession: NC_015844 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 1136557 - 1138245 bp Length : 1689 bp Strand : + Note : Lysyl-tRNA synthetase catalyzes the attachment of L-lysine to the tRNA(Lys) in a highly specific two-step reaction. LysS is an homodimer and binds 3 magnesium ions per subunit; Belongs to the class II of the aminoacyl-tRNA synthetases; Localized in the cy DNA sequence : ATGCAACTTTCGGAACAAGAAATCATTAGACGAGAAAAACTGACCAAATTGCGCGAACTGGGCATCAACCCCTACCCCGC CGCCCTATACCCTGTAGATGCTACTTCAAAGCGCATTAAATCAGAGTTTGAAGAGGGTAAAAAGGTAGTCATTTCAGGGC GATTGATGTCGCGTAGAATTCAGGGCAAGGCTTCTTTTGCCGAGTTGCAAGACAGTGAAGGCCGGATCCAGGTCTATTTC AACCGTGACGAAATTTGTACCGGCGAGGATAAAAGCCTTTACAACGACGTTTATAAAAAACTATTGGACATAGGCGATAT CATTGGTATTGAAGGGGAGCTTTTTACCACCCAGGTGGGCGAAAAAACCGTAATGGTAAAGAACTTTTCGCTCTTGAGCA AGTCTTTACGTCCGTTGCCCTTGCCCAAAAAAGATGCCGAAGGCAATGTTTTTGACGAATTCAACGATCCCGAAATGAGA TACCGGCAACGCTATGTTGATTTGGTGGTCAACCCAAAGGTCAAGGAAACCTTTATCAAAAGGACCAAGATCACCAACAG TATCAGGGAGTTTTACAATAAAGCGGGATACTTGGAAGTTGAAACCCCTATTCTTCAACCCATACCCGGTGGTGCCGCCG CAAGGCCATTTTTAACGCATCACAATGCCTTGAACATTCCCTTGTACCTTCGTATCGCCAACGAGCTATACCTTAAAAGA TTGATCGTTGGAGGTTTTGACGGAGTCTATGAGTTTTCCAAAGATTTCCGTAATGAGGGAATGGACCGTACCCACAATCC CGAGTTTACCGTAATGGAACTCTATGTAGCCTATAAGGATTACAATTGGATGATGGACACCACCGAAAAACTATTGGAAA AAGTGGCCATCGATGCCAACGGATCGTCAAAAGTTACGGTAGGTGAAAACGAAATTGAGTTTAAGGCCCCCTATGCGCGC GTACCTATTCTAGAGGCCATAAAAATCCACACGGGTAAAGATGTGGCCGGTATGGACGAAGAAGAACTACGTGAAACCGC AAAAGAATTAGGTATTGAAGTTGATGAGACCATGGGTGTCGGCAAACTGATAGATGAAATTTTTGGCGAAAAATGTGAGC ACCATTATATACAGCCTACGTTTATTACCGACTATCCAAAAGAGATGAGCCCGTTAACGAAAGAGCACCGAGACAACCCT GCCCTGACCGAACGCTTTGAACTAATGGTCAACGGTAAGGAGCTGGCCAATGCCTATTCTGAGTTGAACGACCCCATAGA TCAGCGCGAACGTTTTGAAGAGCAATTGAAGCTTTCCGAAAAAGGGGACGACGAGGCCATGTTCATTGACCAAGATTTCT TGCGTGCCCTTGAATACGGCATGCCCCCAACATCGGGTATCGGTATCGGCATTGACCGTCTGGTAATGCTCTTGACCAAC AATTCATCGATTCAAGAAGTATTGTTCTTCCCTCAAATGAGACCGGAGAAAAAAGCGATAGCACTGACCGATGAAGAAAA GGCCATTGTAGAATTGTTGAAACCGGAAGGGGAAATGGAACTGTCCGACTTAAAATCAAAAGCCGGACTGAGCGGTAAAA AATGGGACAAGTCGATGAAGGCACTGAACAAACACGGATTGATCAGCGTAAATGTTGAGGGCGACAACAAAACCGTAGTC CTGAAATAA Protein sequence : MQLSEQEIIRREKLTKLRELGINPYPAALYPVDATSKRIKSEFEEGKKVVISGRLMSRRIQGKASFAELQDSEGRIQVYF NRDEICTGEDKSLYNDVYKKLLDIGDIIGIEGELFTTQVGEKTVMVKNFSLLSKSLRPLPLPKKDAEGNVFDEFNDPEMR YRQRYVDLVVNPKVKETFIKRTKITNSIREFYNKAGYLEVETPILQPIPGGAAARPFLTHHNALNIPLYLRIANELYLKR LIVGGFDGVYEFSKDFRNEGMDRTHNPEFTVMELYVAYKDYNWMMDTTEKLLEKVAIDANGSSKVTVGENEIEFKAPYAR VPILEAIKIHTGKDVAGMDEEELRETAKELGIEVDETMGVGKLIDEIFGEKCEHHYIQPTFITDYPKEMSPLTKEHRDNP ALTERFELMVNGKELANAYSELNDPIDQRERFEEQLKLSEKGDDEAMFIDQDFLRALEYGMPPTSGIGIGIDRLVMLLTN NSSIQEVLFFPQMRPEKKAIALTDEEKAIVELLKPEGEMELSDLKSKAGLSGKKWDKSMKALNKHGLISVNVEGDNKTVV LK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 7e-92 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_004735402.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 4e-92 | 44 |
