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Name : smpB (zobellia_4749) Accession : YP_004739163.1 Strain : Zobellia galactanivorans DsiJT Genome accession: NC_015844 Putative virulence/resistance : Unknown Product : SsrA-binding protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0691 EC number : - Position : 5490378 - 5490842 bp Length : 465 bp Strand : + Note : SmpB binds specifically to the ssrA RNA and is required for stable association of ssrA with ribosomes. SsrA RNA recognizes ribosomes stalled on defective messages and acts as a tRNA and mRNA to mediate the addition of a short peptide tag to the C-terminus DNA sequence : ATGGTTCAAAAGAACATCAACATAAAGAACAAAAAGGCCAAGTTTGAATACGAGTTCATAGACACCTATGTAACCGGAAT TGTTTTGGCCGGAACGGAAATAAAATCCATCAGGGAAGGAAAGGCTTCGATCGCCCAGAGTTTTTGTGAGTTTAACGAGC GAGGTGAACTTTTTGTCATCAACATGCAAATTGACGAATATTCCCATGCTTCGCACTTTAACCATAAGCCGAAAGCCGAA CGCAAATTATTGATGGGCAAGCGCGAGCTGAGAAAACTACGCAAGGAAGTAACCACTTCGGGTTTTACCATTGTGCCCAC CAACCTCTTTATTAACGACAGGGGTTTGGCCAAATTAAAAATTGCATTGGCCAAGGGTAAAAAACTTTACGATAAGCGTG AAACCTTGAAAGACCGAGACAATCAACGGAACCTTTCAAGAATTAAGAAAAGCTTCAACAACTAA Protein sequence : MVQKNINIKNKKAKFEYEFIDTYVTGIVLAGTEIKSIREGKASIAQSFCEFNERGELFVINMQIDEYSHASHFNHKPKAE RKLLMGKRELRKLRKEVTTSGFTIVPTNLFINDRGLAKLKIALAKGKKLYDKRETLKDRDNQRNLSRIKKSFNN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| smpB | NP_230495.1 | SsrA-binding protein | Not tested | VPI-1 | Protein | 1e-11 | 43 |
| unnamed | AET14351.1 | SsrA-binding protein | Not tested | SaPI68111 | Protein | 3e-19 | 42 |
| smpB | YP_001800894.1 | SsrA-binding protein | Not tested | Not named | Protein | 1e-17 | 41 |
