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Name : capD (zobellia_3783) Accession : YP_004738200.1 Strain : Zobellia galactanivorans DsiJT Genome accession: NC_015844 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 4441629 - 4443560 bp Length : 1932 bp Strand : + Note : CapD is involved in EPS/LPS biosynthesis. Its exact function is unknown; Contains five transmembrane helices; Localized in the cytoplasmic membrane; Function unclear DNA sequence : ATGATAAAAGACTATTTAGTAAGTAATGCTCATAAATATGCGTCTAAGTGGTTGGTTTTGGCCATTGACGTGGTTATGAT CTCTATTTCCTTTGTGTTATCGTATATCATACGTTTTAATCTCACTTTAGATTTTGAAATAGAAAGACTATTTGTTCAAT TGCCTATTATTGCCTTGATAGCTTTGGCCTCTTTTATTTTTACGGGCTCTCATAAAGGGGTTATTAGGCATACGGGGGTA AGGGATGTATACAACATATTCAATGCCATTTGTCTTTCAAGCATTTTGCTGATTTCCATGGTCTTGTTCAATAGGGAGCT TGGCGTATTCGAGAATTTTACGGTTCCCTTGGGGATCATCATTATCCATAGCTTGTTGAGCTTTGTGGCCCTTACGGCTT CAAGGTATGTGTTTAAGGCGCTTTACAACAACCTTATGGCCCGCGATTTTAAGGTCAATAAGAATGTTTTGATTTTTGGG GCGGGGGAGTCGGGTATATTGACCCAGAACGCCTTGGTCAACCATACAAAAAGCCGGGTTAGGGTAGTGGGTTATGTCGA TGAAGATGTAAAAAAGGTCGGCAAGCAAATCAATGGGGTAAAAGTATTTCATAAAGATGTACTGAACCGCGATTTTATTG TAAAGAACAATATTTCAGAAGTTATTTTTTCTATACAGAATATTGACCCAAGAAGTTTAAAGGTTTTGGTCGAAGGTTTG GTGGACTTTCCGGTCCAGGTTAAAATTGTTCCTCCGGTAGAGCAATGGATCAACGGTGAGTTGAAAGTATCGCAAATCAA GCAGATTCAGATTGAAGATTTGTTGGATCGTGCGCCGATCAACATCAAAAATTCAAAAATCGAAGGCGAAATCAAAAACA AGGTTATTCTTGTTACGGGAGGCGCGGGGTCTATCGGTAGTGAAATCGTACGTCAGGTATGTACTTATAACTATAAATCA TTGATTGTTATCGATCAATCGGAATCGGCCTTGTACGATTTGCAACAAGAATTAAAACAAAATGGCTACCACAATTTTAT GCCTATTGTGGGGGATGTACGCGATAAAAATAGATTGAACAACCTCTTTCAGGAATACAAGCCGAATATTGTTTTTCATG CCGCCGCCTACAAGCATGTTCCTTTAATGGAATACAATGCCTATGAGGCCATTAAGATCAATGTTGCAGGTACAAAGGTA GTGGCCGATTTGTCTATCAGTCATAATGTCGACAAGTTTATATTCATTTCTACCGACAAAGCGGTGAACCCGACGAATGT CATGGGGGCTACCAAACGAATTGCTGAAATGTATATCAGTTGTATGCAGCAAAAAGGAAAGACGAAATTCATAACCACGC GTTTTGGAAATGTGCTTGGGTCAAACGGATCTGTCATTCCTCTGTTTAAAAAGCAAATAGAAAAAGGAGGGCCATTGACC GTTACCCACGAAAACGTTACCCGTTTTTTTATGACCATACCCGAGGCGTCACAATTGGTTCTTGAGGCCGGTGCGATGGG AGAAGGCGGTGAAATTTTTATTTTTGATATGGGTGAATCGGTAAAGATATTCGATTTGGCCAAAAATATGATCAAACTGA GCGGACTTCGATATCCTGAGGATATCGATATAAAAATCACAGGTTTGAGACCCGGTGAAAAGTTGTACGAAGAACTGTTG GCTAATGGGGAAAATACCTTGCCTACCTATCATAAAAAAATTATGATCGGTAAGACCAGGGAGCTGGATTATACCTTGGT ACATGCTAAAATAGATGAACTTTGTGTGTCCAATATGTTCTTTAATGAAAGCACGGTAAGTTTAATGAAGGAAATTGTCC CAGAATTTATCTCCAATAATTCGGAGTTGTGTTTGCTTGATAAAAAGAAGCAGAACACAACTAAGAATCATCCGCTTAAA AAAGTTTTATAA Protein sequence : MIKDYLVSNAHKYASKWLVLAIDVVMISISFVLSYIIRFNLTLDFEIERLFVQLPIIALIALASFIFTGSHKGVIRHTGV RDVYNIFNAICLSSILLISMVLFNRELGVFENFTVPLGIIIIHSLLSFVALTASRYVFKALYNNLMARDFKVNKNVLIFG AGESGILTQNALVNHTKSRVRVVGYVDEDVKKVGKQINGVKVFHKDVLNRDFIVKNNISEVIFSIQNIDPRSLKVLVEGL VDFPVQVKIVPPVEQWINGELKVSQIKQIQIEDLLDRAPINIKNSKIEGEIKNKVILVTGGAGSIGSEIVRQVCTYNYKS LIVIDQSESALYDLQQELKQNGYHNFMPIVGDVRDKNRLNNLFQEYKPNIVFHAAAYKHVPLMEYNAYEAIKINVAGTKV VADLSISHNVDKFIFISTDKAVNPTNVMGATKRIAEMYISCMQQKGKTKFITTRFGNVLGSNGSVIPLFKKQIEKGGPLT VTHENVTRFFMTIPEASQLVLEAGAMGEGGEIFIFDMGESVKIFDLAKNMIKLSGLRYPEDIDIKITGLRPGEKLYEELL ANGENTLPTYHKKIMIGKTRELDYTLVHAKIDELCVSNMFFNESTVSLMKEIVPEFISNNSELCLLDKKKQNTTKNHPLK KVL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-84 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD | YP_004738200.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 9e-83 | 44 |
