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Name : zobellia_2009 (zobellia_2009) Accession : YP_004736449.1 Strain : Zobellia galactanivorans DsiJT Genome accession: NC_015844 Putative virulence/resistance : Virulence Product : TRAP transporter large permease subunit Function : - COG functional category : G : Carbohydrate transport and metabolism COG ID : COG1593 EC number : - Position : 2346863 - 2348137 bp Length : 1275 bp Strand : + Note : The large permease subunit is a component of a tripartite ATP-independent periplasmic (TRAP) transport system. The two other components of the system are a second transmembrane proteins and a extracytoplasmic solute receptor. TRAP transporters are seconda DNA sequence : ATGATTTGGGTCCTTGTCGTAGTATTTGTGGTATGTCTTGTCTTGCGGTTTCCCATCGCCTTTGCACTCGGACTCTCTTG TTTGGGGTATATCTTGGTAAAGGGCATTCCCTTGATCATTGTGCCCATGAAAATGTATTCGGGCATTGATGTATTTGTTC TATTGAGCGTTCCTGGCTTTATTATGGCAGGGAACCTTATGAACCATGGCGGTCTGACCGAAAAGATAATTACCTTTTGC AACCATTTGTTGGGCCATATTAGAGGTGGACTTTCCTTAGTGAATATTGGGGCTTCAATGTTATTTGCCGGTATTTCGGG TACGGCCATTTCAGATACGGCCAGTATGGGGTCTATTATGATTCCGGCTATGAAGAAAGAGGGCTATGACACGGGTTTTT CATGTGCGGTTACGGCGGCTTCCTCAACTATTGGCCCGATTATCCCACCTAGTGTGCCCATGATCATTGCGGCAACCTTG AGCGGACTCTCGGTAGGAAAACTGTTTCTTGCCGGGGCATTGCCCGGCTTGTTGTTGGGGGTGGGCCTATTGATTACGGC CTATGTCATATCCAAAAAGAAAAATTATCCTAAACACGCCAGAAGTAGTTTTAAGCAGGTGGCCCATGGTTTTGTCGATA CGTTTTGGTCACTTTTAATGACCTTTATTATTTTGTACGGTATTATTGGGGGTATTTTTACTCCCACCGAAGCCTCGATA ATCGCAGTAGTCTACGCCTTGGTTATCGGGAAGTTCGTATACAAGCGGTTGAGCTTTAAAAACATTCAAGTCGTTTTTCT CGACAGTATGAAAACCTCGGCCTCACTTATGGTGTTGGTGGGCTTTGCCAACTTATTCGGCTATATATTGATCACGGAAC AGATTCCGCAAAGCATTTCTAGTGAAATATTGGGCTTTACCGATAATAAATATGTGGTACTGCTGTTGATCAATATTCTC TTGATCGTGGTGGGTACTTTTATGGAGACCATTGCCGCTCTTTTGATCTTGTTTCCCATCTTATTAAAAGTGGCCTTGGC CGTAGATGTAGACCCCATTCACTTTGCGGTCATTGCCGTACTGAACCTGATTATCGGTTTGACCACCCCGCCCGTAGGGG TATGCCTGTTTGTGGCGTCGAGCATCGGTAAGATATCTATCGGGGAAGTGAGCAAGGCCGGACTGCCCTTTTTGGTGGTC AGTTTTGTGGTGTTGACCTTGGTGACCTTGTTTCCTTGGTTTTCCTTGGTGCTACCCAATTTATTCATGGATTAA Protein sequence : MIWVLVVVFVVCLVLRFPIAFALGLSCLGYILVKGIPLIIVPMKMYSGIDVFVLLSVPGFIMAGNLMNHGGLTEKIITFC NHLLGHIRGGLSLVNIGASMLFAGISGTAISDTASMGSIMIPAMKKEGYDTGFSCAVTAASSTIGPIIPPSVPMIIAATL SGLSVGKLFLAGALPGLLLGVGLLITAYVISKKKNYPKHARSSFKQVAHGFVDTFWSLLMTFIILYGIIGGIFTPTEASI IAVVYALVIGKFVYKRLSFKNIQVVFLDSMKTSASLMVLVGFANLFGYILITEQIPQSISSEILGFTDNKYVVLLLINIL LIVVGTFMETIAALLILFPILLKVALAVDVDPIHFAVIAVLNLIIGLTTPPVGVCLFVASSIGKISIGEVSKAGLPFLVV SFVVLTLVTLFPWFSLVLPNLFMD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| VC1777 | NP_231412.1 | hypothetical protein | Not tested | VPI-2 | Protein | 7e-49 | 43 |
| VC0395_A1375 | YP_001217318.1 | hypothetical protein | Not tested | VPI-2 | Protein | 7e-49 | 43 |
| VPI2_0025c | ACA01842.1 | TRAP dicarboxylate transporter DctM subunit | Not tested | VPI-2 | Protein | 5e-49 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| zobellia_2009 | YP_004736449.1 | TRAP transporter large permease subunit | VFG1110 | Protein | 3e-49 | 43 |
