Gene Information

Name : copR (SBG_0942)
Accession : YP_004729825.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1050977 - 1051714 bp
Length : 738 bp
Strand : -
Note : -

DNA sequence : 
GTGTCATTTTTACGGGAGGGTCCAGACTCGCTAAAAAGCCTATGGCATACTGCGTTGATGAAGATTTTATTAATTGAAGA
TAACCAAAAAACTATGGAATGGGTACGTCAGGGACTCACTGAAGCAGGCTATGTGGTGGATGCTGCCTGTGATGGACGAG
ATGGACTACACTTGGCGCTCAGGGAGGCTTATTCATTGATTATTCTTGATATTATGCTGCCCGGACTTGATGGCTGGCAA
GTGTTACGCGCATTACGCACAGTACAGTCTCCGCCTGTTATCTGCCTGACGGCACGGGACTCGGTTGAAGACCGAGTCAA
AGGTCTGGAAGCGGGCGCTAATGATTACCTTGTTAAGCCTTTTTCTTTCGCCGAACTGCTGGCCAGAGTGAGAGCTCAAC
TCAGACAACACGTTCCTGTTGCGACCCGGCTGACGATCGATGGTCTGGACATGGATGCTACAAAGCAGTCGGTATCGCGA
AATGGAAAGCCTATTTCCCTGACCCGCAAGGAATTTCTACTTCTCTGGCTTCTGGCGTCCCGGGCAGGAGAAATTGTGCC
CCGAACCGCGATCGCCAGCGAGGTATGGGGTATCAATTTTGACAGTGAAACCAACACCGTTGATGTCGCCATTCGAAGGC
TTCGCGCCAAAGTAGACGATCCGTTTGACGAGAAACTCATTATGACCGTCCGGGGAATGGGCTATCGATTACAACCAGAA
GCCTCGCAGAATGATTAA

Protein sequence : 
MSFLREGPDSLKSLWHTALMKILLIEDNQKTMEWVRQGLTEAGYVVDAACDGRDGLHLALREAYSLIILDIMLPGLDGWQ
VLRALRTVQSPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVATRLTIDGLDMDATKQSVSR
NGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLRAKVDDPFDEKLIMTVRGMGYRLQPE
ASQND

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-96 93
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-100 92

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_004729825.1 response regulator BAC0197 Protein 2e-58 59
copR YP_004729825.1 response regulator BAC0125 Protein 5e-60 57
copR YP_004729825.1 response regulator BAC0083 Protein 5e-57 57
copR YP_004729825.1 response regulator BAC0638 Protein 7e-53 56
copR YP_004729825.1 response regulator BAC0308 Protein 6e-54 55
copR YP_004729825.1 response regulator BAC0111 Protein 2e-56 52
copR YP_004729825.1 response regulator BAC0347 Protein 3e-50 51
copR YP_004729825.1 response regulator NC_002952.2859858.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_007622.3794948.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_003923.1003417.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_013450.8614146.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_002951.3238224.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_007793.3914065.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_002758.1121390.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator NC_010079.5776364.p0 Protein 1e-41 45
copR YP_004729825.1 response regulator AE015929.1.gene1106. Protein 4e-35 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_004729825.1 response regulator VFG0596 Protein 6e-97 93
copR YP_004729825.1 response regulator VFG1389 Protein 2e-32 43