Gene Information

Name : soxS (SBG_3709)
Accession : YP_004732504.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Resistance
Product : regulatory protein SoxS
Function : -
COG functional category : K : Transcription
COG ID : COG2207
EC number : -
Position : 4131638 - 4131961 bp
Length : 324 bp
Strand : -
Note : -

DNA sequence : 
ATGTCGCATCAGCAGATAATTCAGTCCCTTATTGAATGGATTGATGAACATATCGACCAACCGTTGAACATTGATGTTGT
GGCCAAAAAATCGGGTTACTCCAAGTGGTATCTGCAGCGGATGTTCCGTACGGTAACGCATCAAACATTAGGCGAGTATA
TTCGCCAGCGCCGTCTCCTGCTGGCGGCGGTTGAACTACGGACGACCGAGCGCCCGATTTTTGATATCGCGATGGACCTG
GGTTATGTATCGCAACAAACCTTTTCGCGTGTCTTCCGCCGCGAGTTCGATCGTACCCCCAGTGATTATCGTCACCGTCT
GTAG

Protein sequence : 
MSHQQIIQSLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDL
GYVSQQTFSRVFRREFDRTPSDYRHRL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 2e-46 99
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 3e-21 50
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 3e-21 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_004732504.1 regulatory protein SoxS CP001138.1.gene4488. Protein 6e-47 99
soxS YP_004732504.1 regulatory protein SoxS NC_002695.1.914293.p Protein 6e-46 96
soxS YP_004732504.1 regulatory protein SoxS BAC0371 Protein 6e-46 96
soxS YP_004732504.1 regulatory protein SoxS CP000034.1.gene4505. Protein 1e-45 95
soxS YP_004732504.1 regulatory protein SoxS CP001918.1.gene327.p Protein 5e-45 94
soxS YP_004732504.1 regulatory protein SoxS CP000647.1.gene4499. Protein 3e-44 90
soxS YP_004732504.1 regulatory protein SoxS NC_010558.1.6276025. Protein 1e-21 50
soxS YP_004732504.1 regulatory protein SoxS CP001138.1.gene612.p Protein 5e-25 48
soxS YP_004732504.1 regulatory protein SoxS CP000647.1.gene1624. Protein 6e-20 44
soxS YP_004732504.1 regulatory protein SoxS CP001918.1.gene2033. Protein 3e-20 44
soxS YP_004732504.1 regulatory protein SoxS NC_002695.1.917339.p Protein 4e-20 43
soxS YP_004732504.1 regulatory protein SoxS CP001138.1.gene1637. Protein 5e-20 43
soxS YP_004732504.1 regulatory protein SoxS BAC0560 Protein 4e-20 43
soxS YP_004732504.1 regulatory protein SoxS CP000034.1.gene1596. Protein 4e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS YP_004732504.1 regulatory protein SoxS VFG0585 Protein 5e-47 99
soxS YP_004732504.1 regulatory protein SoxS VFG1038 Protein 1e-21 50