Gene Information

Name : SBG_3703 (SBG_3703)
Accession : YP_004732498.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Virulence
Product : type-I secretion protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1538
EC number : -
Position : 4107697 - 4109016 bp
Length : 1320 bp
Strand : +
Note : -

DNA sequence :
ATGAAGATTAAGATACTTTTTCTGACGACTGCTTTTGCTATGCAAAGCGTTTATGCTGACGAGTTACCTGTAATTCCTCT
CAGTGATTTAGTTAATGCCGCATTAAAACATCAGCCTTCTGTTGCTGTTTCGTATTATGAAACTGAAAAGAAAAATAGTG
ATTTAGATGCTACAAGAGCGGCTCTTTATCCTACGTTGGATCTGACGTCTGGTTTTAATAATAACAGGAAAGAGTCCTCA
AACACTGAAAGAAACATTGAAAATAAAATATCTTTATCATATCGGATTACGGATTTTGGAGTAACAGGCGCCAATATTAG
AAAATCTGAATATGAAAGAGATAATAGTAAAACTGATTATGAAAAAACAAAAAATATCGTCTCACAGGACGTTGCGACAA
CCTATTACAATATTAGCAAATATCGTGAGATGATTGAGGGTGTAAACCAGGAGAAAGAGTTCTATAAAAAGATGCTGGAA
AATTTCTCACTGCTGGTTTCTTCTGGTGTCGCTATGCAGTCAGATATGCGTAAGGTGCAGGTCTCTATCGATGCCTTGAA
TACACGAAGCATTATGTATCAGTCCATGCTGGACGATGAGATGTATAAAATGCAAAATATGACGGGTCTGAATTTATCAT
CCGGACAGATTCAAAGTGATGAAAAATTCAACCTCTTCAAAAAATATTCTTTTATAGAAAGCCCTGAAAAGCTTATGGAC
ATGATTATGAAATATAATGATGACTATAAGATGCTCGTTAATACCCGCAAAGCTGCAACTGAAGATATTAATGCCGCAAA
ATCCTCCTATTTCCCAACTGTAGATCTCGTTTCTAGTTATGTACAGAATAATCCAGGCGGTGCAGCTAAAAAAAGTGATT
ATGAAGATGAATTCAAAACAGGTATAAATGTCAGTTTCAACCTTTTTAACGGCTTTAGAAACGCAGCCCAGGAAAGGAAA
ATGGTAGCAAGTTACTCACAGGCTAAACTACAAATTGACGATTTTTTGATTAAAACGCGTTATAACATTGACTCCCAGCT
TTCCAGATATAGTGCAGCGAAAGAAACATACGCTGTAGCTGAGCGTTCACATTTAAACGCTTTACAGCTTACAGAATTAT
ATGAGCAGGAGTTTCAGTTAGGTCAGAAAAGTTTGCTGGATTTAATTTCTAGTCGAAATGAAGCATTTCAGGCATATATA
AGCATGGTTGATAGTAAATATAGTTTGTATATGCTGAAACTACAGCAACTCTCGTTGGTTTTTCATTTAATGGATTATTT
AAAAGGAAGTGCTGTAAGTGAGCTGAACGGAATGAAATGA

Protein sequence :
MKIKILFLTTAFAMQSVYADELPVIPLSDLVNAALKHQPSVAVSYYETEKKNSDLDATRAALYPTLDLTSGFNNNRKESS
NTERNIENKISLSYRITDFGVTGANIRKSEYERDNSKTDYEKTKNIVSQDVATTYYNISKYREMIEGVNQEKEFYKKMLE
NFSLLVSSGVAMQSDMRKVQVSIDALNTRSIMYQSMLDDEMYKMQNMTGLNLSSGQIQSDEKFNLFKKYSFIESPEKLMD
MIMKYNDDYKMLVNTRKAATEDINAAKSSYFPTVDLVSSYVQNNPGGAAKKSDYEDEFKTGINVSFNLFNGFRNAAQERK
MVASYSQAKLQIDDFLIKTRYNIDSQLSRYSAAKETYAVAERSHLNALQLTELYEQEFQLGQKSLLDLISSRNEAFQAYI
SMVDSKYSLYMLKLQQLSLVFHLMDYLKGSAVSELNGMK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY4456 NP_458556.1 putative type-I secretion protein Not tested SPI-4 Protein 0.0 91
SC4138 YP_219125.1 ABC transporter outer membrane protein Not tested SPI-4 Protein 0.0 91
STM4259 NP_463124.1 ABC exporter outer membrane component Not tested SPI-4 Protein 0.0 91
spi4_C AAC26641.1 ABC exporter outer membrane component homolog Virulence SPI-4 Protein 0.0 91
siiC CAE11795.1 putative type-I secretion protein, putative outer membrane component Virulence SPI-4 Protein 0.0 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SBG_3703 YP_004732498.1 type-I secretion protein VFG0579 Protein 0.0 91