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Name : sbdC (SBG_3411) Accession : YP_004732211.1 Strain : Salmonella bongori NCTC 12419 Genome accession: NC_015761 Putative virulence/resistance : Virulence Product : fimbrial membrane usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3748704 - 3751229 bp Length : 2526 bp Strand : - Note : - DNA sequence : ATGATTCGCTTGCGTTTTTATCTCGCGCTGGCTTCGGGGGCCCTGTTGGGTTTCGCGACTCAAACGATGGCCAGAGATAG CCTGTTTAACCCCAGTCTTCTGGAAATTGACCATCCTGTCGATGTGGATATTCATCAGTTTAACCGTGCGAATATGTTGC CGCCAGGTGATTATAAAGTCGATATTATTATTAACGACAAATTCTTTGAGAAGCGGGACGTTAAGTTTGTCCAGGATAAA CCGGATGCGGAACTACACCCCTGCTTTGTTGCGGTTAAAGAGGTTTTATCTTCGTATGGTGTCAAGGTTGATGCCTTAAA AGCATTACAGAATGTGGATAGTCAGGCCTGTCTGAATCCTGCGCCATTTATCGATGGTTCAATCTGGACATTTGATTCGA ATAAATTTGTGCTCAATATTTCGATTCCGCAGATTTATTTGGATACGGCAGCCTATGGCTATATCAGCCCGTCGCGTTGG GATGAGGGCATTAACGCGATGATGGTCAACTATGATTTTTCCGGGACGCATACGGTTAAATCGAATCACGATGTCGGGGA AGATGATACGTATTATCTGAACTTGCGTAACGGGATTAATCTGGGGGCCTGGCGAGTGCGTAACTACAGTACGCTGAACG CGACGGGCAGCGATACGGAATATCACTCTATCAGTAGCTATATCCAGCGAGACATTGCCGCATTACGTAGCCAGATCATG GTTGGCGATACCTGGACGGCGAGCGATGTGTTCGATAGTACTCAGATCCGTGGCGTCAGGCTGTATACCGACGACGATAT GTTGCCGTCAAGCCTGAATGGCTTTGCCCCGATAGTGCGCGGGGTGGCGAAGAGTAACGCAACAGTAATCATCCGGCAAA ATAAATACGTGATTTATCAATCTGCTGTGCCGCAGGGCGCGTTTGAAATCACCGACCTGAATACGGTAAGCGGTGGTGGC GATCTCGATGTCACCATTAAAGAAGAAGACGGTAGCGAGCAGCACTTTACTCAGCCGTATGCGTCGCTGGCGATTCTGAA ACGTGAGGGACAGACTGACCTTGATATGAGTGTCGGCGAGCTGCGGGATGAAAACAGCTTCACCCCTAATGTTGTTCAGG CGCAGGTATTACACGGTTTGCCGTGGGGATTAACGCTGTATGGCGGAACGCAGATTGCGGAGGATTATGCCGCCGCCGCC TTCGGTATGGGCAAAGATATGGGGTCATTCGGGGCGATGTCGCTGGATGTGACTCATGCGCGTTCGCATTTTAACGATGG CGATGATGAAAACGGCCAGTCCTGGCGTTTTCTCTATTCCAAACGTTTTGATGATACCGATACCAATTTTCGCCTCGTGG GATACCGTTATTCAACTGAAGGGTTCTACTCTCTCAGTGAGTGGGCATCGCGCCAGGATAATGGTTCTGACTTCTGGGTG AAGGGCAACCGGCGTAGCCGCGTTGAAGGCACCTGGACGCAGTCATTTGGCCGCGACTGGGGGAATATTTATCTGACCAT CAGCCGTCAGCAATACTGGCAGACAGATGAAGTGGAACGCCTGGTACAGCTGGGTTATAGCAATACCTGGCGGCAAGTAT CATGGAACGTATCGTGGAACTACACCGATTCCATCAATCGTTATTCCGGTAATAAGTACTATAACGATGATAATGACGAT GATAACAACCACGAACATATCTTCATGCTTTCGGTCTCTATACCGCTTTCCGGCTGGCTGGATAATAGCTACGTCAACTA TTCGATGACGCAAAATAACCATAATGAAAGCTCAATGCAGGCGGGAATCGGCGGTACGTTGCTGGAAGGACACAATCTTT CTTATAACGTCCAGGAATCGTGGGATAGCTCGCCAGAAGATGTCTATAGCGGCAACGCCAGTATGGAATACAACGGCACC TATGGTGCGGTGAACGGCAGCTATGCCTGGAGCCGCGATTCGCAACGCCTGAACTACGGCGCACGCGGCGGCATCCTGGT GCATAGCGGCGGCATTACCTTCTCGCAGGAACTGGGCGAAACCGTGGCGTTAGTCGAAGCGCCGGGCGCTGGCGGTTTAT CGGTAGAGAACGCCACCGGGGTTTCCACCGACTGGCGCGGATACACGGTAAAAACCCAGCTTAACCCGTATGATGAGAAC CGGGTGGCAATAAACAGTAATTATTTTGCCAAAGCCAATATTGAACTGGATAACACGGTAGTGAATCTGGTGCCAACACG CGGCGCGGTCGTCAAAGCGGCGTTTGTTACCCATGTGGGCTATCGCGTGCTGTTTAACGTTAATCAAGGCAACGGTAAGC CAGTCCCCTTTGGGGCGATGGCGACGGCGGAGCTGGATTCTGGAACCGTCACCGGAATTGTTGGTGATAATGGCGAACTC TATTTATCCGGAATGCCGGAAAAGGGGCAATTTATCATTTCCGGACAAAATACATGTATTGTTGATTATCATCTTGCTGA ACAGAAAGATAATGAGCTCATACAAATCCCCGTCATTTGTAAGTGA Protein sequence : MIRLRFYLALASGALLGFATQTMARDSLFNPSLLEIDHPVDVDIHQFNRANMLPPGDYKVDIIINDKFFEKRDVKFVQDK PDAELHPCFVAVKEVLSSYGVKVDALKALQNVDSQACLNPAPFIDGSIWTFDSNKFVLNISIPQIYLDTAAYGYISPSRW DEGINAMMVNYDFSGTHTVKSNHDVGEDDTYYLNLRNGINLGAWRVRNYSTLNATGSDTEYHSISSYIQRDIAALRSQIM VGDTWTASDVFDSTQIRGVRLYTDDDMLPSSLNGFAPIVRGVAKSNATVIIRQNKYVIYQSAVPQGAFEITDLNTVSGGG DLDVTIKEEDGSEQHFTQPYASLAILKREGQTDLDMSVGELRDENSFTPNVVQAQVLHGLPWGLTLYGGTQIAEDYAAAA FGMGKDMGSFGAMSLDVTHARSHFNDGDDENGQSWRFLYSKRFDDTDTNFRLVGYRYSTEGFYSLSEWASRQDNGSDFWV KGNRRSRVEGTWTQSFGRDWGNIYLTISRQQYWQTDEVERLVQLGYSNTWRQVSWNVSWNYTDSINRYSGNKYYNDDNDD DNNHEHIFMLSVSIPLSGWLDNSYVNYSMTQNNHNESSMQAGIGGTLLEGHNLSYNVQESWDSSPEDVYSGNASMEYNGT YGAVNGSYAWSRDSQRLNYGARGGILVHSGGITFSQELGETVALVEAPGAGGLSVENATGVSTDWRGYTVKTQLNPYDEN RVAINSNYFAKANIELDNTVVNLVPTRGAVVKAAFVTHVGYRVLFNVNQGNGKPVPFGAMATAELDSGTVTGIVGDNGEL YLSGMPEKGQFIISGQNTCIVDYHLAEQKDNELIQIPVICK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| lpfC | YP_006098365.1 | fimbrial outer membrane usher protein | Not tested | Tn2411 | Protein | 0.0 | 68 |
| lpfC | NP_839216.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 67 |
| lpfC | NP_709462.1 | long polar fimbriae | Not tested | SHI-2 | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| sbdC | YP_004732211.1 | fimbrial membrane usher protein | VFG0454 | Protein | 1e-147 | 42 |
| sbdC | YP_004732211.1 | fimbrial membrane usher protein | VFG0446 | Protein | 6e-135 | 41 |
