|
Name : lpfC (SBG_3231) Accession : YP_004732043.1 Strain : Salmonella bongori NCTC 12419 Genome accession: NC_015761 Putative virulence/resistance : Virulence Product : outer membrane fimbrial usher protein Function : - COG functional category : N : Cell motility COG ID : COG3188 EC number : - Position : 3548941 - 3551469 bp Length : 2529 bp Strand : - Note : - DNA sequence : ATGACATGGACGCATCTTCCTCTGGGCAATAAGACCTCGCGTTTCACGCAGTCTGCGCTTGCGCTGATGGTAGCGGGGAC GCTCCCCGCGTATGCGGGAACATTTAACCCGCGCTTTCTGGAGGATGTGCCGGGAATTGATCAGCACGTCGACCTTTCAA TGTATGAATCTAATAAAGCTGAACAGCTTCCAGGTAAATACCGCGTCTCGGTGGTGGTCAACGACAAAAAAATGGAGTCT CGCACCCTGGAGTTTAAGGCAGCGACAGAGGCGCAGCGCGCAAAAATGGGTGAATCCCTGGTGCCGTGCTTAAGCCGCGT GCAGCTTGAAGATATGGGCGTGCGTATTGATAGCTTCCCGGCGCTGAAAATGGCGCCGCCTGAAGCCTGTGTTGCTTTTG ACGACATTATTCCCCAGGCCGCCAGCCATTTCGATTTTGCAGACCAGACCCTGATCATGAGCTTCCCGCAGGCTGCGATG AAGCAGACAGCGCGCGGTACGGTGCCAGAATCGCAGTGGGATGAAGGGGTGAATGCCTTGCTGGTGGATTATAACTTCTC CGGCAGCAACGCCAGCTATGACGCGCACGACAGTGATACCAGCTACAACAGCGACAGCTACTATCTAAACCTGCGCAGCG GTATGAACCTGGGGGCATGGCGGTTACGTAACTACAGTACCTGGACGCGAAACGACGGTAACAACAAATGGGATAACATT GGTACATCCTTAAGTCGTGCCATTGTACCGCTGAAATCACAACTGACGTTGGGGGATACCTCCACCGCCGGTGATATTTT TGACAGTGTTCAGATGCGCGGTGCGCAGTTAACTTCCGACGAAGAGATGCTGCCTGACAGCCAGCGCGGGTTTGCACCCG TCATCCGGGGTATTGCCAAAAGTAACGCCGAAGTCACCGTTGAACAGAACAACTACGTTATTTACCGTACGTTTGTTCAG CCGGGTGCGTTTGAAATTAACGACCTGTACCCAACTTCAAACAGCGGCGACCTGACGGTCACCATTAAAGAAGCGGACGG CAGCGAGCAGAAGTTCGTTCAGCCGTTCTCCGCGGTGGCGATCCTCCAGCGTGAAGGCCATCTCAAGTACAGCCTTTCCG TCGGGGAATACCGCGCCGGGAACTATAACAGCGCCGAGCCGAAATTCGGGCAGCTTGATGCCATGTACGGCCTGCCGTAT GGCTTTACCGTTTACGGTGGTTCAATCTTCTCTGACGACTATTATTCGCTGGCGGGAGGATTAGGTAAAAACTTCGGCTA TATCGGTGCGGTCTCCATCGATGTAACCCAGGCAAAAAGTAAGCTGGCAAATGAAGAGAATTCGGAAGGTCAGTCTTATC GTTTCCTCTACTCTAAGAGCTTTAACAGCGGTACCGATTTCCGTCTGCTGGGTTACAAGTATTCGACCAGCGGCTATTAC ACCTTCCAGGAAGCGACGGATGTCCGTAGCGATGCGGACAGCTCGTATAGCCAGTACCACAAACGTAGTCAGATTCAGGG CAACGTAACGCAGCAGCTAGGCACCTGGGGGTCGGTCTATTTCAACGTCACCCAGCAGGATTACTGGAACGATGAAGGTA AGCAACGTTCGCTGAATGCCGGTTACAACGGCCGTATTGGCCGCGTGAGCTACAGCGTTGCTTACACCTGGACGAAAAGC CCGGAGTGGGATGAGAGCGATCGTCTGCTGTCATTCTCCATGTCGATTCCCCTGGGACGTGCATGGAGTAACTACCGCCT CACGACCGATCAGCATGGGCGAACCAACCAGCAATTGGGCGTCAGCGGTGCCGTGCTGGAAGACCGCAACCTGAACTATA GCGTGCAGGAAGGCTACGGCAGCAACGGCGAGGGTAACAGCGGCAGCGTGAACCTGGATTACCAGGGTGGCATGGGTAGC GCCAGCCTGGGCTACAACTACAACCGTGACGGCCAGCAGGTGAACTACGGTCTGCGCGGCGGTGTGATAGCCCATAGTGA AGGCATCACCCTTTCTCAGCCGCTGGGTGAATCCATGGCCATTATCTCCGCACCGGGCGCGCGCGGCGCGCATGTGATCA ACAACGGCGGTGTGGAAGTGGACTGGATGGGTAATGCGGTTGTGCCTTACCTCACTCCGTACCGTGAAACGGAAGTCTCA CTGCGAAGCGACAGTCTGAACAACCGGGTTGACCTGGATACCGCCTCCGTCAACGTGGTGCCGACGCGCGGCGCAATTGT TCGTGCCCGCTTCGATACCCGCGTGGGCTATCGCGTGCTAATGAACCTGACGCAGGCGAATGGCAAAGCGGTGCCGTTTG GTGCGACCGCCACGTTGCTGGATACCAAAAAAGAGTCCAGCAGTATCGTGGGTGAAGACGGGCAACTTTATATCAGCGGG ATGCCGGAGAAAGGCGCCCTTCAGGTGAACTGGGGTAAAGACCAGGCACAGCAATGCCGCGTGGCGTTTACGCTGCCGGA ACAACAGGATAATACCGGCGTAGTGATGGCGAATGCCGTTTGCCAGTAA Protein sequence : MTWTHLPLGNKTSRFTQSALALMVAGTLPAYAGTFNPRFLEDVPGIDQHVDLSMYESNKAEQLPGKYRVSVVVNDKKMES RTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSDTSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNNKWDNI GTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGAQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQ PGAFEINDLYPTSNSGDLTVTIKEADGSEQKFVQPFSAVAILQREGHLKYSLSVGEYRAGNYNSAEPKFGQLDAMYGLPY GFTVYGGSIFSDDYYSLAGGLGKNFGYIGAVSIDVTQAKSKLANEENSEGQSYRFLYSKSFNSGTDFRLLGYKYSTSGYY TFQEATDVRSDADSSYSQYHKRSQIQGNVTQQLGTWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVSYSVAYTWTKS PEWDESDRLLSFSMSIPLGRAWSNYRLTTDQHGRTNQQLGVSGAVLEDRNLNYSVQEGYGSNGEGNSGSVNLDYQGGMGS ASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVS LRSDSLNNRVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTKKESSSIVGEDGQLYISG MPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| fim2D | AFH78429.1 | putative fimbrial usher protein | Virulence | KpGI-5 | Protein | 5e-162 | 44 |
| sfaF | CAC16953.2 | SfaF protein | Virulence | PAI III 536 | Protein | 2e-163 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lpfC | YP_004732043.1 | outer membrane fimbrial usher protein | VFG0454 | Protein | 0.0 | 98 |
| lpfC | YP_004732043.1 | outer membrane fimbrial usher protein | VFG0876 | Protein | 7e-164 | 45 |
| lpfC | YP_004732043.1 | outer membrane fimbrial usher protein | VFG1645 | Protein | 1e-163 | 41 |
| lpfC | YP_004732043.1 | outer membrane fimbrial usher protein | VFG0446 | Protein | 1e-149 | 41 |
| lpfC | YP_004732043.1 | outer membrane fimbrial usher protein | VFG0912 | Protein | 2e-162 | 41 |
