Gene Information

Name : sipD (SBG_2503)
Accession : YP_004731323.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Virulence
Product : pathogenicity island 1 effector protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 2746363 - 2747385 bp
Length : 1023 bp
Strand : -
Note : -

DNA sequence : 
ATGCTTAATATTCAAAATTATTCCGCTTCTCCTCATCCGGGGCTCGTTGCTGAACGGTCGCAGACTCCTTCGGCGAGCGA
GCATGTCGAGATTGCCGCGGTACCGTCTACCACAGAACATCGCGGCACAGATATCATCTCATTATCGCAGGCGGCGACTA
AAGCCCAGCAGGCACAACAGACGTTGCAGTCAACGCCACCGATCTCTGAAGAGAATAATGACGAGCGCACGCTGGCGCGC
CAACAGTTGACCAGCAGCCTGAATGCTCTGGCGAAGTCCGGCGTGTCATTATCCGCAGAACAAAATGAGAACCTGCGAAG
CGCGTTTTCTGCGCCGACCTCGGCCTCATTTAGCGCTTCGCCTATGGCGCAGCCAAAAACAACTATTTCCGATGCCGAGA
TTTGGGAGATGGTTTCCCAAAATATCTCTGCGATAGGTGACAGCTATCTGGGCGTTTATGAAAACGTTGTCGCAGTCTAT
ACCGATTTTTATCAGGCTTTCAGTGATATTCTTTCCAAAATGGGAGGCTGGTTATCACCGGGTAAAGATGGAAATACCGT
TAAGCTAAACGTTAATTCGCTTAAAAGTGAAATAAGTAGTCTGGTTAATAAATACAACCAGGTAAATCAAAATACGATTT
TATTTCCCACGCAGAACGGTAGTGGCGTAACAACTGCGTCGAGAGCGGAGGCCGAACAGTGGATTAAAGAACTGAATTTA
CCAGACAGCTGCCTAAAGTCGTCAGGTGGCGGTTATGTTGTACTGGTGGATTTGGGGCCACTGAACAAAATGGTAAGCGA
TCTTGGTGGAATAGGATCTGGTACTGCCCTCGAAATGGATAACGCCAAATATCAGGCCTGGCAGTCTGGTTTTAAAGCGC
AGGAAGAAAATTTAAAAACAACGCTACAGACGCTGACGCAGAAATACAGCAATGCCAATTCATTGTACGACAACCTGGTC
AAAGTGCTGAGCAGTACGATAAGTAGCAGTCTGGAAACCGCCAAAAGCTTCCTGCAGGGATAA

Protein sequence : 
MLNIQNYSASPHPGLVAERSQTPSASEHVEIAAVPSTTEHRGTDIISLSQAATKAQQAQQTLQSTPPISEENNDERTLAR
QQLTSSLNALAKSGVSLSAEQNENLRSAFSAPTSASFSASPMAQPKTTISDAEIWEMVSQNISAIGDSYLGVYENVVAVY
TDFYQAFSDILSKMGGWLSPGKDGNTVKLNVNSLKSEISSLVNKYNQVNQNTILFPTQNGSGVTTASRAEAEQWIKELNL
PDSCLKSSGGGYVVLVDLGPLNKMVSDLGGIGSGTALEMDNAKYQAWQSGFKAQEENLKTTLQTLTQKYSNANSLYDNLV
KVLSSTISSSLETAKSFLQG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sipD NP_457277.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 3e-122 93
sipD NP_806486.1 pathogenicity island 1 effector protein Virulence SPI-1 Protein 3e-122 93
sipD YP_217802.1 cell invasion protein Virulence SPI-1 Protein 4e-112 87
sipD NP_461804.1 translocation machinery component Virulence SPI-1 Protein 2e-113 87

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sipD YP_004731323.1 pathogenicity island 1 effector protein VFG0544 Protein 7e-114 87