Gene Information

Name : sitD (SBG_2485)
Accession : YP_004731306.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Virulence
Product : iron transport inner membrane protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 2729186 - 2730034 bp
Length : 849 bp
Strand : +
Note : -

DNA sequence :
ATGTTCTTAACTACGCTACTGGAGCCGTTCCAGTTTGATTTTATGGTGAACGCCCTTATGGTTTCGGTCATTGTAGCGAT
TCCCTGCGCCCTGCTATCCGTATTTTTAGTATTAAAAGGCTGGGCATTAATGGGCGACGCTATGAGCCATGCCGTATTTC
CCGGGGTCGTGCTGGCGTATATCATCGGTATTCCCCTGGCGATTGGCGCTTTTATTGCCGGGCTATTTTGCGCGATCGCG
ACCGGTTATCTGGACGACAACAGCCGTATCAAACGTGATACGGTAATGGGTATCGTCTTTTCAGGCATGTTTGGCGCAGG
CCTGGTGCTCTACGTCTCTATTGAATCGGAAGTGCATCTGGATCATATTCTGTTTGGCGATATGCTGGGCGTATCGCTGG
GGGATATTGTACAAACGGCGATAATTGCGCTGGGTATTGCGCTCATCATCGGACTGAAATGGAAAGATCTTCTGTTACAC
GCTTTTGACCCACACCAGGCAAAAGCCAGCGGTCTGAATATTCCTCTACTGCATTATGGCCTGCTGTGTATGATTGCGCT
GACTATCGTTGCCACGCTGAAATCGGTGGGGATTATTCTGTCGATCTCTTTGCTCATCGCCCCTGGCGCGATAGCCATTT
TGCTGACGCGACGCTTTGCGCACGCGCTGGGAATAGCGGTCAGCCTGTCAATAATTACCGCCTTTTTGGGCGTGTATCTG
TCATTTTATCTTGATAGCGCACCTGCGCCGACTATTGTTGTCTTATTTGCCATCGTATTTATTGTCGCGTTTACTTACTC
AACATGGCGCGACAGACGTGGCGAAACCGTACCCGCGGTACACGGTTAA

Protein sequence :
MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMGDAMSHAVFPGVVLAYIIGIPLAIGAFIAGLFCAIA
TGYLDDNSRIKRDTVMGIVFSGMFGAGLVLYVSIESEVHLDHILFGDMLGVSLGDIVQTAIIALGIALIIGLKWKDLLLH
AFDPHQAKASGLNIPLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFAHALGIAVSLSIITAFLGVYL
SFYLDSAPAPTIVVLFAIVFIVAFTYSTWRDRRGETVPAVHG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_461785.1 permease Virulence SPI-1 Protein 2e-99 94
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-99 94
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 1e-99 94
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 2e-99 93
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 2e-99 93
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 3e-33 43
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 3e-33 43
sitC NP_461784.1 permease Virulence SPI-1 Protein 3e-33 43
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-33 43
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-33 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_004731306.1 iron transport inner membrane protein BAC0352 Protein 8e-100 94
sitD YP_004731306.1 iron transport inner membrane protein BAC0442 Protein 7e-57 54
sitD YP_004731306.1 iron transport inner membrane protein BAC0441 Protein 8e-33 44
sitD YP_004731306.1 iron transport inner membrane protein BAC0351 Protein 2e-33 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitD YP_004731306.1 iron transport inner membrane protein VFG0528 Protein 7e-100 94
sitD YP_004731306.1 iron transport inner membrane protein VFG0527 Protein 1e-33 43