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Name : ldcC (SBG_0225) Accession : YP_004729134.1 Strain : Salmonella bongori NCTC 12419 Genome accession: NC_015761 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 259322 - 261472 bp Length : 2151 bp Strand : + Note : - DNA sequence : ATGAATATCATCGCCATTATGGGGCTGCATGGGGTTTTTTATAAAGATGAGCCCATCAAGGAGCTTGAGCGTGCGTTACA GGCGCAGGGATTTCAGATTATCTGGCCGCAAAATAGCGTTGACCTGTTGAAGTTTATTGAACATAACCCACGCATTTGTG GTGTGATTTTTGACTGGGATGAATACAACCTCGACCTGTGTAGTGATATCAATCAGCTAAATGAATATCTTCCTCTCTAC GCTTTTATCAATACCCACTCAACGCTGGATGTGAGCGTGCATGAGATGCGTATGGCGCTGTGGTTCTTTGAATATGCGCT GGGGCAGGCGGATGATATCGCCACCCGCATTCGCCAGTACACTCATGAATACCTCGACAATATCACCCCGCCGTTTACCA AAGCCCTGTTCACCTATGTGAAAGAGGGAAAATATACTTTCTGTACGCCGGGCCATATGGCGGGTACGGCATATCAAAAA AGCCCGGTGGGTTGTTTGTTTTACGATTTTTTCGGCGGCAACATGCTAAAAGCCGACGTTTCTATTTCAGTGACTGAGCT TGGCTCGCTGCTGGATCATACCGGGCCGCATCTGGAAGCGGAAGAATACATTGCCCGCACGTTTGGCGCCGAGCAGAGTT ATATGGTGACCAATGGTACGTCGACGTCAAATAAAATTGTCGGCATGTACGCCGCGCCGTCAGGAAGCACATTACTCATC GATCGCAATTGCCACAAATCCCTTGCGCATCTTTTGATGATGAGTGACGTGGTACCGCTATGGCTAAAACCGACGCGAAA CGCGCTCGGTATTCTCGGGGGGATTCCGAGGCGTGAATTTACTCGCGACAGTATCGCACGTAAGGTGGCGGAAACCGCGC AGGCGCAGTGGCCGGTTCATGCCGTTATCACCAATTCTACCTATGATGGTTTGTTGTATAACACAAACTGGATTAAACAG GCGCTGGATGTTCCTTCAATCCACTTTGATTCCGCGTGGGTGCCTTATACTCATTTCCATCCTATTTATCAGGGAAAAAG CGGCATGAGCGGCGAGCGGGTACCGGGCAAAGTTTTCTTTGAAACGCAGTCTACTCATAAAATGCTGGCGGCGCTCTCGC AGGCCTCGCTGATTCATATCAAAGGGGAGTATGACGAAGAGACGTTTAATGAAGCGTTTATGATGCACACCTCCACATCG CCGAGCTATCCTATTGTTGCTTCTATTGAGACGGCGGCGGCGATGCTGCGTGGTAATCAGGGAAAGCGATTGATCAATCG CTCGGTGGAACGAGCGCTCCATTTTCGTAAAGAGGTGCAGCGGTTACGTGAAGAGTCCGATAGCTGGTTCTTTGATATCT GGCAACCGGAAGTGGTGGATGAAGCTGAGTGCTGGCCGATAGCGCCGGGAGAGACATGGCACGGTTTCACCGATGCTGAT GACGATCATATGTTCCTTGACCCGGTCAAGGTGACGATCCTGACGCCAGGGATGGATGAGCAGGGCAACATGAGCGAAGA GGGGATACCCGCCGCGCTGGTGGCGAAATTCCTTGATGAACGCGGTGTAGTGGTTGAAAAAACCGGGCCGTATAATTTGC TATTTTTGTTCAGTATTGGCATTGATAAGACCCGTGCGATGGGACTGCTGCGCGGCCTGACCGAATTTAAACGCGCTTAC GATCTGAATTTGCGCGTCAAAAATATGTTGCCGGATCTGTATGCGGAAGATCCCGATTTTTATCGTAATATGCGTATTCA GGATCTGGCGCAGGGGATTCATAAATTGATCCGCCAGCACGATCTCCCTGGCTTAATGCTGCGGGCATTCGAGGTTTTAC CCGAGATGGTCATGACGCCGCATCAGGCCTGGCAGCGTCAGATCAAAGGCGAAGTAGAAACTGTCGCGCTCGAGCAACTG CCAGGACGCATTTCCGCGAATATGATTCTGCCGTATCCGCCAGGCGTTCCGCTGTTGATGCCTGGAGAGAGAATCACTCA GGAAAGCCGGGCTGTGCTCGATTTTCTGTTGATGCTATGTTCGATTGGTCAACACTATCCCGGTTTTGAAACGGATATTC ACGGCGCGAAACAGAATGAAGATGGCGTGTACCAGGTGCGAGTTTTAAAAAATACCAGCCAGCTTGCCTGA Protein sequence : MNIIAIMGLHGVFYKDEPIKELERALQAQGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYNLDLCSDINQLNEYLPLY AFINTHSTLDVSVHEMRMALWFFEYALGQADDIATRIRQYTHEYLDNITPPFTKALFTYVKEGKYTFCTPGHMAGTAYQK SPVGCLFYDFFGGNMLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPSGSTLLI DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPRREFTRDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQ ALDVPSIHFDSAWVPYTHFHPIYQGKSGMSGERVPGKVFFETQSTHKMLAALSQASLIHIKGEYDEETFNEAFMMHTSTS PSYPIVASIETAAAMLRGNQGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEVVDEAECWPIAPGETWHGFTDAD DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMVMTPHQAWQRQIKGEVETVALEQL PGRISANMILPYPPGVPLLMPGERITQESRAVLDFLLMLCSIGQHYPGFETDIHGAKQNEDGVYQVRVLKNTSQLA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 71 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_004729134.1 | lysine decarboxylase | VFG1670 | Protein | 0.0 | 61 |
