Gene Information

Name : int (SBG_1850)
Accession : YP_004730693.1
Strain : Salmonella bongori NCTC 12419
Genome accession: NC_015761
Putative virulence/resistance : Unknown
Product : bacteriophage integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 2013496 - 2014773 bp
Length : 1278 bp
Strand : +
Note : -

DNA sequence : 
ATGGAGCCCCCCGCTATGTCACTCACTGATACCGCTATCCGCAAGCTCAGACCCACAGACAAACCCTTCAAACTCGGCGA
CAGTGCCGGACTGTACCTGCTGATCAAACCCAACGGCTCAAAACTCTGGTATATGAAGTACCGCATTGACGGGAAAGAGA
AGAAGCTGGCCTTTGGCCCTTACCCGGATGTTTCCCTGCTTACGGCACGCCAGCTCCGCGATGCAGCACGTATAAAAATG
CGTGAAGGTGTCGATCCTTCCGTTGACAAAAAAATCGCACAGCAGAAAAAGAAAAACGGCCAGACATTCCGCCAGATCGC
CATAAACTGGCATGCCGATCACCGGCGCTGGTCTGAACATTATGCGACGACTATCCGGCGCAGGCTGGAAATGTATATTT
TCCCGGATATCGGGGACAGATACATCGATCAAATCGTCACGGAAGATCTGCTGTTTACCCTGCGTAAGGTGGAGAACAAA
GGCTTTCTGGAGATCACCGCGCGGCTGAAAAACTACGTTACGGAAATCATGCGCTATGCAGTGAAAAAGCAGTTAATCAG
GTCAAACCCGGCGCTGGATCTGGATGGTGAGTTTACGCCGCCGGAAACACAGCATTACCCGGCCCTGCCGCTTGAGAAAC
TGCCAGAATTATTATCCCGGACGGATAACTACTCCGGCAGGCTGCTGACACGGTATGCGCTGAAGCTGTCGCTGCTGTTC
TTCGTGCGCTCCAGCGAGCTGCGCTTTGCCCGCTGGAGTGAAATCGACTGGCAACAGAAGCTCTGGATCATCCCGGAAGA
ACGGGAGCAGATCGAAAACGTGCGCTTCTCTCACCGTGGCACAAAGATGAAAACACAGCACATCGTCCCGCTGTCCGATC
AGGCAATGGCGATCCTGAAACAAACTGAAGCGCTCTCCGGGCATCTGGCGTTTATTTTCCCCGGCGAATACGACCAGGAC
AAGTGCATGAGCGACAACACCATCAGCAAGGCATTGCGTGTGATGGGCTACGACACCCGGAAAGAGATCTGCGGTCACGG
CTTCCGGGCGATGGCGTGCAGTGCACTGAGTGAGTCGGGACTGTGGAGCAAAGAGGCGATTGAAAAACAGATGAGCCATC
AGGAAAGGAACAGCGTGCGTGCTGCCTATATTCATAAGGCTGAATATCTGGAGGAGCGGATCAATATGATGCAGTGGTGG
GCGGATTATCTGGATGCAAACACAAAACGGCATGTGTCGCCTTATCAGTTTGCCGGGCATTTAAAAGCAGCATCATGA

Protein sequence : 
MEPPAMSLTDTAIRKLRPTDKPFKLGDSAGLYLLIKPNGSKLWYMKYRIDGKEKKLAFGPYPDVSLLTARQLRDAARIKM
REGVDPSVDKKIAQQKKKNGQTFRQIAINWHADHRRWSEHYATTIRRRLEMYIFPDIGDRYIDQIVTEDLLFTLRKVENK
GFLEITARLKNYVTEIMRYAVKKQLIRSNPALDLDGEFTPPETQHYPALPLEKLPELLSRTDNYSGRLLTRYALKLSLLF
FVRSSELRFARWSEIDWQQKLWIIPEEREQIENVRFSHRGTKMKTQHIVPLSDQAMAILKQTEALSGHLAFIFPGEYDQD
KCMSDNTISKALRVMGYDTRKEICGHGFRAMACSALSESGLWSKEAIEKQMSHQERNSVRAAYIHKAEYLEERINMMQWW
ADYLDANTKRHVSPYQFAGHLKAAS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 8e-120 59
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 8e-120 59
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 6e-108 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 4e-107 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 6e-108 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 3e-108 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-108 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-108 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 6e-107 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 6e-107 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 5e-107 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 2e-105 55
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-105 54
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 2e-107 54
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 1e-107 54
int AAK00456.1 Int Not tested SHI-1 Protein 5e-100 54
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 2e-99 54
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 4e-106 54
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 7e-107 54
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-106 54
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-106 54
int AAL51028.1 CP4-like integrase Not tested LEE Protein 7e-107 54
int-phe AAL60261.1 Int-phe Not tested LEE Protein 7e-107 54
int CAC81896.1 integrase Not tested LEE II Protein 8e-99 54
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 2e-104 53
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 2e-104 53
int YP_002346908.1 integrase Not tested HPI Protein 3e-108 53
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 3e-108 53
int2 NP_993013.1 integrase Not tested HPI Protein 3e-108 53
int CAA08754.1 integrase Not tested HPI Protein 1e-108 53
int CAA21384.1 - Not tested HPI Protein 3e-108 53
int CAB59974.1 integrase Not tested HPI Protein 4e-109 53
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-105 52
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 2e-100 52
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-84 52
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-75 51
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 6e-91 49
int AAD44730.1 Int Not tested SHI-2 Protein 4e-65 42
int CAC39282.1 integrase Not tested LPA Protein 9e-66 42
aec33 AAW51716.1 Int Not tested AGI-3 Protein 9e-66 42
unnamed AFX83955.1 integrase Not tested SE-PAI Protein 1e-67 42
SF3698 NP_709437.1 integrase Not tested SHI-2 Protein 9e-64 42
int AAD54663.1 Sai integrase Not tested SHI-2 Protein 7e-64 42
S4835 NP_839238.1 integrase Not tested SHI-2 Protein 9e-64 42
intL NP_290239.1 integrase for prophage 933L and the LEE pathogenicity island Not tested LEE Protein 2e-64 41
ECs4534 NP_312561.1 integrase Not tested LEE Protein 2e-64 41
int AAC31482.1 CP4-like integrase Not tested LEE Protein 1e-64 41
int ACU09430.1 integrase Not tested LEE Protein 1e-64 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
int YP_004730693.1 bacteriophage integrase VFG0626 Protein 2e-108 55
int YP_004730693.1 bacteriophage integrase VFG1693 Protein 3e-107 55
int YP_004730693.1 bacteriophage integrase VFG1536 Protein 1e-99 54
int YP_004730693.1 bacteriophage integrase VFG0598 Protein 4e-64 42
int YP_004730693.1 bacteriophage integrase VFG0783 Protein 8e-65 41