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Name : hofB (SBG_0134) Accession : YP_004729048.1 Strain : Salmonella bongori NCTC 12419 Genome accession: NC_015761 Putative virulence/resistance : Virulence Product : protein transport protein HofB Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 150266 - 151651 bp Length : 1386 bp Strand : - Note : - DNA sequence : ATGAAAGACGCGCAGCTCAACACATTGTGCCAACGTCATCAGGCCGTACTGATGAACAGCGACAATAGCAGCATCTCCGT TGCAGTGGTCGACGCCCCCTCTCATGAATTACTCGACGCCTTGCATTTCGCCACGCAAAAACAGATCGATATTGTGTGCT GGACCCGCCAGCAAATGGAGAATCATTTACATAAGCAGCATCAGATGTCTTCGGTAAACGCCGCGAAAGATGGAGAAACC GCCGCCCAACTTCTCAATCAGACATTACGCTCAGCAATGGCGAAACGCGCCTCCGATATTCATCTTGAACCCACCGCCAA CCGCTACCGGATAAGGCTCCGTATCGATGGCGTTCTGCATATTCTGCAGGATATCGCCAAAGAGAGGGGCATTGCGCTGA CGGCCAGATTGAAAGTCCTGGGAAATCTGGACATCGCCGAACACCGACTGCCACAGGACGGACAGTTTACCGTTGAACTT ACGGGCGACAGCATCTCTTTTCGTATCGCCACGCTTCCCTGTAAAGAAGGCGAAAAAGTCGTCTTACGTTTACTGCGTCA GGTTGATCAAACGCTGGCGCTGGACGCGCTGGGAATGCACACCGCACAATTTACCGCCTTTATGCAAGCCCTGCAGCAGC CTCAGGGACTGGTACTGGTGACGGGGCCCACCGGTAGCGGAAAAACAGTCACGTTATACAGCGCGCTACAAACCCGAAAT ACACCGGATATCAACCTCTGTAGCGTAGAAGATCCGATAGAGATTCCGCTGGACGGTATTAACCAGACGCAAATCCATCC TCGGGCCGGGCTCACCTTTCAAAATGTACTGCGCGCACTATTACGCCAGGATCCCGACATCATCATGGTGGGTGAAATTC GCGACGGTGACACCGCAGAAATCGCCATTAAAGCGGCGCAAACGGGCCATCTGGTACTTTCAACGCTACATACGAACTCC ACCAGCGAGACGCTAATACGCTTGCAACAGATGGGGGTAGCACGCTGGATGATTTCATCGGCGCTTACACTGGTAGTAGC GCAACGCCTGGTAAGAAAGCTGTGCCCACACTGCAAGCAGCGCCTGGATGATCCCGTGATACTGGCGCCTGCTCTCTGGC CCAGCGCGCTACCACGCTGGCAGGCAAGCGGCTGTCAGCATTGTTACCACGGCTTTTATGGCCGAACCGCGTTATTCGAA GTGCTAACCGTTACCCCGGCATTACGCCAGTTAATTGCCAGCGGCGCATCGGCGCAAGCACTGGAAACCCACCTCCAACA GACCGGTACAGGAACGCTTTTTGAAAATGGCTGTCGCGCCGTAGACCAAGGCATCACCTCCTTTGAAGAGATAGTACGCG TTCTGGGGATGCCCCATGACTGTTAA Protein sequence : MKDAQLNTLCQRHQAVLMNSDNSSISVAVVDAPSHELLDALHFATQKQIDIVCWTRQQMENHLHKQHQMSSVNAAKDGET AAQLLNQTLRSAMAKRASDIHLEPTANRYRIRLRIDGVLHILQDIAKERGIALTARLKVLGNLDIAEHRLPQDGQFTVEL TGDSISFRIATLPCKEGEKVVLRLLRQVDQTLALDALGMHTAQFTAFMQALQQPQGLVLVTGPTGSGKTVTLYSALQTRN TPDINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNVLRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNS TSETLIRLQQMGVARWMISSALTLVVAQRLVRKLCPHCKQRLDDPVILAPALWPSALPRWQASGCQHCYHGFYGRTALFE VLTVTPALRQLIASGASAQALETHLQQTGTGTLFENGCRAVDQGITSFEEIVRVLGMPHDC |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 7e-70 | 46 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-70 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hofB | YP_004729048.1 | protein transport protein HofB | VFG2048 | Protein | 4e-71 | 46 |
| hofB | YP_004729048.1 | protein transport protein HofB | VFG2426 | Protein | 1e-70 | 45 |
| hofB | YP_004729048.1 | protein transport protein HofB | VFG0182 | Protein | 4e-73 | 45 |
| hofB | YP_004729048.1 | protein transport protein HofB | VFG0233 | Protein | 4e-71 | 44 |
| hofB | YP_004729048.1 | protein transport protein HofB | VFG1876 | Protein | 1e-73 | 43 |
