Gene Information

Name : WKK_00875 (WKK_00875)
Accession : YP_004725730.1
Strain : Weissella koreensis KACC 15510
Genome accession: NC_015759
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 183371 - 184060 bp
Length : 690 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAATAAAATTTTGATAATTGAAGATGAGGAAAATTTAGCACGATTTGTTGAGTTAGAATTACAACATGAAGGCTATGA
AACGACAGTTGCCGATAATGGTCGAACTGGGTTAGAAATATCGTTAGAAGAAAATTTCGATTTGATTCTATTAGATCTAA
TGTTACCAGAATTAAGTGGGTTAGAAGTTGCACGTAGACTTCGAGAAGTCAAAAACACACCTATTATTATGATGACGGCT
CGTGATTCAGTTATTGATCGCGTTTCAGGGTTAGACTATGGGGCTGACGATTATGTTGTAAAGCCGTTTGCAATTGAAGA
ATTGTTGGCACGTATCCGGGCTTTATTGCGTCGAATTAATATTGAAACTGAAGAGCATGCTAGTCATCAAAGTATTGTAA
AGTATCGTGATTTGGTGGTTGAAAAAGAAAATCGAATTGCGCGACGTGGTGATGAAATTATCAATTTAACGAAACGCGAA
TATGAATTACTTGTTATTTTGATGGAGAATATTAATGTTGTTCAATCAAGAGAAGTACTTTTGGCCAAGGTTTGGGGATA
TGATGATAACGTTGAAACCAATGTTGTAGATGTTTATATCCGTTACCTACGTAATAAAATTGATTATAGTGACTCTAAAA
CTTCATATATTCAAACTGTTCGTGGAACCGGTTATGTGATGCGTCAATAG

Protein sequence : 
MNKILIIEDEENLARFVELELQHEGYETTVADNGRTGLEISLEENFDLILLDLMLPELSGLEVARRLREVKNTPIIMMTA
RDSVIDRVSGLDYGADDYVVKPFAIEELLARIRALLRRINIETEEHASHQSIVKYRDLVVEKENRIARRGDEIINLTKRE
YELLVILMENINVVQSREVLLAKVWGYDDNVETNVVDVYIRYLRNKIDYSDSKTSYIQTVRGTGYVMRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-22 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-22 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WKK_00875 YP_004725730.1 DNA-binding response regulator HE999704.1.gene1528. Protein 2e-65 68
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_010079.5776364.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_002952.2859858.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_007622.3794948.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_003923.1003417.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_013450.8614146.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_002951.3238224.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_007793.3914065.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_002758.1121390.p0 Protein 9e-40 53
WKK_00875 YP_004725730.1 DNA-binding response regulator AE015929.1.gene1106. Protein 2e-37 51
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_012469.1.7685629. Protein 1e-28 43
WKK_00875 YP_004725730.1 DNA-binding response regulator BAC0125 Protein 6e-23 41
WKK_00875 YP_004725730.1 DNA-binding response regulator BAC0083 Protein 2e-23 41
WKK_00875 YP_004725730.1 DNA-binding response regulator NC_012469.1.7686381. Protein 3e-27 41
WKK_00875 YP_004725730.1 DNA-binding response regulator HE999704.1.gene2815. Protein 5e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
WKK_00875 YP_004725730.1 DNA-binding response regulator VFG1390 Protein 9e-29 42
WKK_00875 YP_004725730.1 DNA-binding response regulator VFG0596 Protein 4e-23 42
WKK_00875 YP_004725730.1 DNA-binding response regulator VFG1389 Protein 1e-25 42
WKK_00875 YP_004725730.1 DNA-binding response regulator VFG0473 Protein 8e-18 41