Gene Information

Name : TPY_1942 (TPY_1942)
Accession : YP_004719865.1
Strain : Sulfobacillus acidophilus TPY
Genome accession: NC_015757
Putative virulence/resistance : Unknown
Product : ISChy4, transposition helper protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1484
EC number : -
Position : 1854890 - 1855729 bp
Length : 840 bp
Strand : -
Note : -

DNA sequence :
ATGATGCCTCTCGAACAGGTCCGTCAACAACTGGAGACCTTGGGGTTGCTGGATGCCGCGGCGGTCCTTGAGAATCGTCT
CGACAGGGCCAGTCACGATGGCATCTCCTATGTGGAGTTTCTCCAGGACCTCTTGCGTGTGGAAACCCAGGCTCGGCGGG
AGCGGTATCTGAAGGCCCGCTTGCGGCTGGCACACTTTCCCGCCGTCAAACGGTTGGAAGATTTCGATTGGGCCTTTCAA
CCGTCGATTGATGCGCGGCAAATCCAAGCGCTCGCGTCGTTGGCCTTCGTGGCGGAAGCCACGAACATTCTCTTCCTCGG
ACCTCCCGGGGTCGGGAAGTCCCATCTCGCTATCGCATTAGGCATGAAGGCCGTGGAGGCAGGCTTCGGGGCGTATTTTG
TCACCGCCGATCGTCTATTGCAGGACCTCGAGCAAGCGTATCACGAACATCGGTTGGAGCGGCGCATGCGGGTCTACCTA
TCGCCCAAGGTGCTCATCGTCGACGAATTTGGCTACCTGCCCTTATCTCGCGTGGCCGCGACGTTATTCTTTCAACTGGT
GTCCGCTCGCTATGAGCGAGGTAGTCTCATTCTGACCTCGAACAAGGGCTTTGCCGACTGGGGCGACGTATTGGGCGATC
CCGTCATCGCCACGGCCATCTTGGACCGTTTGCTGCACCATTCTCACGTGGTGAACATTCGCGGGGACAGTTACCGACTC
AAAGACAAGAAGCGGGCCGGCGTGTGGGGGACTCCGCCGGCCACCCCCGCATCCCCGGGGGATTCATTAGGTGGGTCAAA
TTTGGTTGGCGCAAGTGGATCAAATTTCGATCGGCGTTGA

Protein sequence :
MMPLEQVRQQLETLGLLDAAAVLENRLDRASHDGISYVEFLQDLLRVETQARRERYLKARLRLAHFPAVKRLEDFDWAFQ
PSIDARQIQALASLAFVAEATNILFLGPPGVGKSHLAIALGMKAVEAGFGAYFVTADRLLQDLEQAYHEHRLERRMRVYL
SPKVLIVDEFGYLPLSRVAATLFFQLVSARYERGSLILTSNKGFADWGDVLGDPVIATAILDRLLHHSHVVNIRGDSYRL
KDKKRAGVWGTPPATPASPGDSLGGSNLVGASGSNFDRR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
orfB CAE85183.1 OrfB protein, transposase, IS100 Not tested PAI V 536 Protein 1e-47 45
api84 CAF28558.1 putative transposase Not tested YAPI Protein 1e-47 45
YPTB1586 YP_070114.1 transposase/IS protein Not tested HPI Protein 1e-47 45
y1093 CAC43411.1 IS100 transposase; transposase ORFA Not tested PAI III 536 Protein 1e-47 45
unnamed CAA21402.1 - Not tested HPI Protein 1e-47 45
unnamed CAB46598.1 IS100 transposase Not tested HPI Protein 1e-47 45
s0036 CAD33774.1 ORF B protein Not tested PAI I 536 Protein 1e-47 45
y1093 CAD42087.1 OrfB protein of IS100 transposase Not tested PAI II 536 Protein 1e-47 45
y2410 NP_669717.1 transposase/IS protein Not tested HPI Protein 2e-47 45
aec58 AAW51741.1 Aec58 Not tested AGI-3 Protein 1e-47 45
YPO1901 YP_002346891.1 transposase/IS protein Not tested HPI Protein 2e-47 45
y1093 CAD66188.1 transposase Orf B, insertion element IS100 Not tested PAI III 536 Protein 8e-47 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
TPY_1942 YP_004719865.1 ISChy4, transposition helper protein VFG1627 Protein 6e-48 45
TPY_1942 YP_004719865.1 ISChy4, transposition helper protein VFG1606 Protein 6e-48 45
TPY_1942 YP_004719865.1 ISChy4, transposition helper protein VFG1515 Protein 6e-48 45
TPY_1942 YP_004719865.1 ISChy4, transposition helper protein VFG1663 Protein 4e-47 44