Gene Information

Name : orfB (PSTAB_0007)
Accession : YP_004712377.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Unknown
Product : ISPsy21, transposase orfB
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 8019 - 8921 bp
Length : 903 bp
Strand : +
Note : -

DNA sequence : 
ATGAAGGCGTTCATCGACGAATACCGTGCGGTTTATGGAGTCGAGCCGATCTGCCGGGTGCTGCCGATCGCTCCATCGAC
CTACTACGCGCATGCACGCTGCCAGACCGACCCCGAGCGACGCTCTCGGCGAGCACGACGTGACGATGTGTTGAGCACGC
ATATTCAACGGGTCTGGAACGAAAACTTCCACGTCTACGGTGCGCGCAAGGTCTGGCGCCAACTCAGGCGTGAAGGCGTG
GTAGCGGCGCGCTGTACGGTGGAGCGGCTGATGCGTCGGCTGGGGCTCAAAGGCGTCGTGCGCGGCAAACCAGTCAAGAC
CACTGTCAGCGACAAGGCGACTCCGTGCCCGCTGGACAAGGTCAATCGCCAGTTCCGCGCCGAGCGGCCAAACGCGCTCT
GGGTGTCGGACTTCACCTACGTCAGTACCTGGCAAGGCTTCGTCTATGTGGCCTTCGTCATCGACGTGTTCGCCCGACGG
ATCGTTGGCTGGCGGGTCTCCAGTTCGGCCCGTACCGACTTCGTTCTCGATGCGCTGGAGCAGGCCTTGTATGCCCGCCG
CCCGGTCGATCAAGGCGGCCTCATCCATCACAGCGACCGCGGCGTGCAATATGTTTCTATCCGCTACACCGAGCGCCTGG
CCGAAGCTGGCGTCGAGCCCTCGGTGGGCAGCGTAGGCGACTCCTATGACAATGCCTTGGCCGAGACCATCAACGGCCTG
TACAAAGCCGAGGTAATCCACCGGCGGTCATGGCAGAGCCGCGAGGCGGTGGAACTGGCAACGCTGGCATGGGTGGACTG
GTTCAACCACCGACGATTGCTGGAGCCCATCGGGAACATACCGCCGGCGGAAGCCGAAGCGATCTACTATCGACACCTTA
CCGAGTCTGCCCAAGCGGCATGA

Protein sequence : 
MKAFIDEYRAVYGVEPICRVLPIAPSTYYAHARCQTDPERRSRRARRDDVLSTHIQRVWNENFHVYGARKVWRQLRREGV
VAARCTVERLMRRLGLKGVVRGKPVKTTVSDKATPCPLDKVNRQFRAERPNALWVSDFTYVSTWQGFVYVAFVIDVFARR
IVGWRVSSSARTDFVLDALEQALYARRPVDQGGLIHHSDRGVQYVSIRYTERLAEAGVEPSVGSVGDSYDNALAETINGL
YKAEVIHRRSWQSREAVELATLAWVDWFNHRRLLEPIGNIPPAEAEAIYYRHLTESAQAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Z4334 NP_289559.1 IS629 transposase Not tested OI-122 Protein 3e-66 70
S4063 NP_839232.1 IS629 orfB Not tested SHI-2 Protein 4e-66 69
unnamed AAL67406.1 putative transposase Not tested PAI II CFT073 Protein 9e-75 69
ECO103_3585 YP_003223443.1 IS629 transposase OrfB Not tested LEE Protein 2e-81 66
IS629 CAI43840.1 transposase for IS629 Not tested LEE Protein 1e-80 65
IS629 CAC37926.1 transposase for IS629 Not tested LEE Protein 4e-81 65
IS629 CAI43821.1 transposase for IS629 Not tested LEE Protein 4e-81 65
IS629 CAI43909.1 transposase for IS629 1 Not tested LEE Protein 4e-81 65
unnamed AAL67398.1 putative transposase Not tested PAI II CFT073 Protein 4e-83 65
ECO111_3776 YP_003236111.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-83 65
Z1660 NP_287162.1 transposase for IS629 Not tested TAI Protein 1e-81 65
Z1221 NP_286756.1 transposase Not tested TAI Protein 6e-82 65
APECO1_3499 YP_854312.1 transposase for IS629 Not tested PAI I APEC-O1 Protein 5e-82 65
c5178 NP_757026.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-82 65
c5213 NP_757061.1 transposase IS629 Not tested PAI II CFT073 Protein 2e-83 65
ORF_34 AAZ04444.1 putative IS629 transposase Not tested PAI I APEC-O1 Protein 4e-82 65
ECO111_3721 YP_003236061.1 putative IS629 transposase OrfB Not tested LEE Protein 2e-83 65
Z1638 NP_287141.1 transposase Not tested TAI Protein 2e-81 64
unnamed CAD42083.1 hypothetical protein Not tested PAI II 536 Protein 3e-80 64
Z1198 NP_286733.1 transposase Not tested TAI Protein 2e-81 64
c5167 NP_757015.1 transposase IS629 Not tested PAI II CFT073 Protein 6e-56 64
tnp7109-25 YP_001800853.1 transposase for insertion sequence Not tested Not named Protein 6e-57 49
CDCE8392_1958 YP_005134489.1 transposase-like protein Not tested Not named Protein 4e-38 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
orfB YP_004712377.1 ISPsy21, transposase orfB VFG1602 Protein 1e-80 64