Gene Information

Name : tctD (PSTAB_4003)
Accession : YP_004716373.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Virulence
Product : transcriptional regulatory protein TctD
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4329405 - 4330076 bp
Length : 672 bp
Strand : +
Note : -

DNA sequence : 
ATGCGGATTCTTCTGGTCGAGGATCACCCCCAGCTGGCCGAGAGCGTGGCGCAGGCGCTGCGCGGCGCCGGCTGGACCGT
GGACCTGCTGCACGACGGCATCGCCGCCGACCTGGCGCTGGCCAGCGAGGACTATGCGCTGGCGATTCTCGACGTCGGGC
TGCCACGGCTGGATGGCTTTCAGGTGCTGGCGCGCCTGCGCGAGCGCGGCAAGACGCTGCCGGTGCTGATGCTCACCGCG
CGCGGTGAGGTCAGCGATCGCGTGCACGGCCTCAACCTCGGTGCCGACGACTACCTGGCCAAGCCGTTCGAGCTGTCCGA
GCTGGAAGCAAGGGTCAAGGCGCTGCTGCGACGCAGCGTCGGCGGCGGCGAGCGCCAGCAGCGCTGCGGTGTACTGGTCT
ACGACCTGGATGCGCGGCGCTTCAGCCTGGCCGAGGAGCCGCTGACGCTGACCTCCCGGGAACAGGGCGTGCTCGAGGCA
CTGATCGCCCGTCCCGGCCGGGTGATGAGCAAGGATCAGCTGGCCGCCCAGGTGTTCGGCCTGGACGAGGACGCCAGCGC
CGACGCCATCGAGATCTATGTCTACCGGCTGCGCAAGAAGCTCGAGGGCCAACCGGTGCGCATCGTCACCTTCCGCGGCC
TGGGCTACATGCTCGAGGCGCTCGATGGCTGA

Protein sequence : 
MRILLVEDHPQLAESVAQALRGAGWTVDLLHDGIAADLALASEDYALAILDVGLPRLDGFQVLARLRERGKTLPVLMLTA
RGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGGGERQQRCGVLVYDLDARRFSLAEEPLTLTSREQGVLEA
LIARPGRVMSKDQLAAQVFGLDEDASADAIEIYVYRLRKKLEGQPVRIVTFRGLGYMLEALDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 1e-27 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 9e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_004716373.1 transcriptional regulatory protein TctD BAC0083 Protein 2e-34 46
tctD YP_004716373.1 transcriptional regulatory protein TctD BAC0638 Protein 5e-32 45
tctD YP_004716373.1 transcriptional regulatory protein TctD BAC0347 Protein 7e-30 42
tctD YP_004716373.1 transcriptional regulatory protein TctD BAC0111 Protein 2e-34 42
tctD YP_004716373.1 transcriptional regulatory protein TctD NC_002516.2.879194.p Protein 8e-30 41
tctD YP_004716373.1 transcriptional regulatory protein TctD BAC0197 Protein 2e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tctD YP_004716373.1 transcriptional regulatory protein TctD VFG1390 Protein 3e-32 44
tctD YP_004716373.1 transcriptional regulatory protein TctD VFG0596 Protein 4e-28 42
tctD YP_004716373.1 transcriptional regulatory protein TctD VFG1389 Protein 2e-23 42