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Name : hsdM (PSTAB_3398) Accession : YP_004715768.1 Strain : Pseudomonas stutzeri ATCC 17588 Genome accession: NC_015740 Putative virulence/resistance : Unknown Product : type I restriction-modification system, M subunit Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : - Position : 3648772 - 3650697 bp Length : 1926 bp Strand : - Note : - DNA sequence : ATGAGTGTTTTGGCCCAACTTGGCGAAGCCCTGCTGGCCGCAGTGCCGGTTGATGGCAGCAGCATTGGCAATCAAACGTT GTTTGAGCGGCTAAAAGCGCAGTTGCCGGGAATCAGTGAGGAGCAGCTCTGGGCCGCTCGCGATGCCCTGATTGAACAAG GGGTACTGGTCAAAGGCCGTGGCCGCGGTGGTTCGGTCCTGCGCGCGCCAGCCTCGGGCAGCAGCCTGGCCGATCAGGTG TTGAACAAGGCGCGTGAGCGCATGGCTCCGGTGAACACTGAAGAAGTCTCTGCTGGTTATGTGGTGCAAGCCGCCGCAGC GGTGAAAAAAGCCAAAGCGCCCAAGCAGCAGGCCACCAGTATCGAGGCCATGGAGAAAACCCTCTGGGCCACCGCCGACA AGCTGCGCGCCAATATGGACGCCGCCGAGTACAAGCACATCGTGCTCGGGCTGATCTTCCTCAAGTACATCTCCGACAGC TTCGCCGGCCGCCGCGCCGAGCTTACGCACAAGCTGCTGGATGAAAACGACGACTACTATCTGGGCGACGATGATCCGGA GGCGCTTAACGCCGAGCTGGAAGACCGCGACTACTACCGCGAGGTCAACGTGTTCTGGGTGCCGGAAGTGGCGCGCTGGG AGTCGATCCGCGCCGCCGCCAAACAGGTGGATATCGGCAAGCGCATCGACGATGCCCTGACCGCCATCGAGGCGGAAAAC CCACGGCTGAAAAACATCCTCGACAAACGCTATGCCCGCGCTCAGTTGCCAGACGGCAAGCTCGGCGAGCTGGTGGATTT GATCTCCACCATCGGCTTTGGCGATGACACCGGCAAAGCCCGCGATCTGCTCGGCCAGGTGTATGAATACTTCCTCGGCC AGTTCGCCAGCGCCGAAGGCAAGCGCGGCGGGCAGTTCTATACGCCGGCCAGCATCGTCAAAACCCTGGTGGCGGTGCTT AACCCGCACTACGGCAAGGTCTACGACCCGTGCTGCGGCTCGGGCGGCATGTTTGTGCAATCCGAGAAATTTATCGAAGC CCACGGCGGCAAGCTGGGCGATGTGTCCATCTACGGCCAGGAAGCCAACCCCACCACCTGGCGCCTGGCGGCGATGAACC TGGCCATTCGCGGCATCGACTTCAACCTCGGCAAAGAGCCGGCCGACACCTTTGTGCGCAACCAGCACTCGGACCTGCGC GCCGACTTTGTGCTGGCCAACCCGCCGTTCAATATCAGCGACTGGTGGCACGGCAGCCTGGAAGGCGACCCGCGCTGGGT GTATGGCACACCGCCGCAAGGCAACGCCAACTACGCCTGGCTGCAACATATGCTCTACCACCTCAAGCCCAGCGGCCGTG CCGGCATCGTCCTGGCCAACGGCTCGATGAGTTCCAGCCAGAACAGCGAAGGCGAGATCCGCAAAGCCATGGTCGAGGCC GACGTAGTGGAAGTCATGGTCGCGCTGCCCGGCCAGTTGTTCTTCAACACGCAGATTCCCGCCTGCCTGTGGTTCCTCGC CAAACAGAAAACCGCCCGCCCCGGTGAAGTGCTGTTTATCGACGCACGCAAACTCGGCACCAGCGTGAGCCGAGTGCAGA TCGAGCTGACTGACGCCGATATCGAACGCATCGCCCAGACCGTTGCCAAGTGGCGCGGCGAGCCGCTGGATATGGGCGGT GAGATTGCCGAGTACCAGGACATCGCCGGCTTCTGCCGCAGCGTCAAACTGGCGGAAATCGCCGAGCACGGCCATGTGCT GACGCCGGGCCGCTATGTCGGTGCTGAAGAGGTGGAGGATGACGACGAAGCCTTTGCCGAGAAGATGCAACGGCTGACCC AACAGCTTGGCGAACAGATGGAAAAGGGCGCGGAACTCGATCAGTTGATCCGGCAGAAGCTGGGGGGGCTGGGGTATGAA ATCTGA Protein sequence : MSVLAQLGEALLAAVPVDGSSIGNQTLFERLKAQLPGISEEQLWAARDALIEQGVLVKGRGRGGSVLRAPASGSSLADQV LNKARERMAPVNTEEVSAGYVVQAAAAVKKAKAPKQQATSIEAMEKTLWATADKLRANMDAAEYKHIVLGLIFLKYISDS FAGRRAELTHKLLDENDDYYLGDDDPEALNAELEDRDYYREVNVFWVPEVARWESIRAAAKQVDIGKRIDDALTAIEAEN PRLKNILDKRYARAQLPDGKLGELVDLISTIGFGDDTGKARDLLGQVYEYFLGQFASAEGKRGGQFYTPASIVKTLVAVL NPHYGKVYDPCCGSGGMFVQSEKFIEAHGGKLGDVSIYGQEANPTTWRLAAMNLAIRGIDFNLGKEPADTFVRNQHSDLR ADFVLANPPFNISDWWHGSLEGDPRWVYGTPPQGNANYAWLQHMLYHLKPSGRAGIVLANGSMSSSQNSEGEIRKAMVEA DVVEVMVALPGQLFFNTQIPACLWFLAKQKTARPGEVLFIDARKLGTSVSRVQIELTDADIERIAQTVAKWRGEPLDMGG EIAEYQDIAGFCRSVKLAEIAEHGHVLTPGRYVGAEEVEDDDEAFAEKMQRLTQQLGEQMEKGAELDQLIRQKLGGLGYE I |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 2e-128 | 54 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 5e-129 | 53 |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 2e-126 | 52 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 2e-121 | 52 |
