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Name : topB (PSTAB_2955) Accession : YP_004715325.1 Strain : Pseudomonas stutzeri ATCC 17588 Genome accession: NC_015740 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 3156992 - 3158932 bp Length : 1941 bp Strand : + Note : - DNA sequence : ATGCAACTCTATCTCTGCGAAAAGCCTTCCCAGGCCCGCGACATCGCCAAGGTGCTCGGCGCCAACCGGCGCGGCGACGG CTGCCTGCAGGGTGCCGGGGTGACGGTGACCTGGTGCATCGGCCATCTGCTGGAGACCGCCCCGCCGGACGCCTATGACC CGCGCTACAAGCGCTGGGTGCTGGCCGACCTGCCGATCGTGCCGGAGCGCTGGAAGATGCTGGTCAAGCCAAAGACCGCC AGCCAGTTCAAGGCGGTCAAGCGCCTGCTCGGTGAATGCAGCGAGCTGGTGATCGCCACCGACGCCGACCGCGAAGGCGA AATGATCGCCCGCGAGCTGGTCGAGCACTGCCGCTATCGCGGGCCGATCCGCCGGCTGTGGCTGTCGGCACTGGACGATG CCTCGATCCGCAAGGCGCTGGCCGCGCTCAAACCCGGCGCCGAGACTTTCAACCTCTACCACGCCGCCCTTGGACGCTCG CGCGCCGACTGGCTGATCGGCATGAACATGAGCCGGCTGTTCACCCTGCTCGGCCGCCAGTCCGGCTACCGCGGCGTGCT GCCGGTGGGCCGCGTGCAGACGCCGACGCTGCGTCTGGTGGTGGACCGCGACCGCAGCATCGCCGATTTCATCCCGGTGC CGTTCTGGGCCATCGACGTGCAGCTGCTCGCCGATGGCGCCGCGTTCACCGCGCAGTGGCAGGCGCCGGACGACCTTTGC GATGACCAGGGCCGCTGCCTCGATCAGGCTCGTGCGCAGCAGGCTGCGGACGCCATGCGCAACGCCGCCAGCGCTCGCCT GCTGAAGCTCAAGACCGAGCGGCAGCGCGAGGCGGCACCCTTGCCGTTCGATCTCGGCACGCTGCAGGAAGTCTGCTCGA AGAAGCTCGGCCTCGGCGCCCAGGAAACCCTCGACATCGCCCAGGCGCTGTACGAAACCCACAAGCTGATCACCTACCCG CGCAGCGATTGCGGCTACCTGCCGCTGAGCCAGCACGGCGAAGCGCGCGCGATTGTCGCTGCGCTGACTCAAGCCGACCC GACGCTCGCGGCGCTGCAGCCGCATCTGGACCTGTCGCGCCGCTCGCGGGCCTGGAACGACGCCAAGGTCGGCGCCCACC ACGGCATCATCCCAACCGCCGCCGCGCGTGGTCTGGAACGCCTGGCCGGGCGCCCGCGTGCGGTGTATGAGCTGATCCGC GCGCGCTACCTGGCGCAGTTCCTGCCCAACCATGAGTACGACCGCACCCAGGCCGACTTCGACTGCGCCGGCCAGGCGCT GCGCGCGGTGGGCAAGCGCGTCGTCGAACCGGGCTGGAAACGCGCCATGCCCGAAGCACTGGCGCCGGCACGGGGCAATC GCGAGGAACATGCGCCGCAAAGCCTGCCAGCCCTGCAACAGGGCGGGGATTACGCGGTGGGCGAGATCACACTCAAGGAC CAGCAGACACAACCGCCGAAGCCCTTCACCGAAGGCGACCTGATCAAGGCAATGAAGAACGTCGCCAAGCTGGTGGACGA CCCGCGGCTGAAGCAGAAACTCAAGGACACCACCGGCATCGGCACCGAGGCGACCCGCGCCGGGATCATCCAGGGCCTGC TCGACCGCGGCTATCTGGTTCGCCAGGGCAAGGCGCTGGCGGCGACACCGGCGGCGTTCAGCCTAATCGACGCCGTGCCG CGGCCGATCGCCGACCCAGGTACCACGGCGATCTGGGAGCAGGCGCTGGACATGGTGCAGAGCGGCGAAATGCCGTTGGA GGAATTCGTCGCCAAGCAATCGGCATGGATGAGCAAGCTGGTCGAACGCTGCGCCGGGCTGCGCATGACCATCAGTGGCC CACCGGTGGCCGCCGGCCGAGGCGGCAAACCGTGGAAGAAGAAACGCAGCGCCTCGCCGCGCAAAACGGCGTGGCGACGC AAGCCGGCCACCGCAGACTGA Protein sequence : MQLYLCEKPSQARDIAKVLGANRRGDGCLQGAGVTVTWCIGHLLETAPPDAYDPRYKRWVLADLPIVPERWKMLVKPKTA SQFKAVKRLLGECSELVIATDADREGEMIARELVEHCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRS RADWLIGMNMSRLFTLLGRQSGYRGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQLLADGAAFTAQWQAPDDLC DDQGRCLDQARAQQAADAMRNAASARLLKLKTERQREAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETHKLITYP RSDCGYLPLSQHGEARAIVAALTQADPTLAALQPHLDLSRRSRAWNDAKVGAHHGIIPTAAARGLERLAGRPRAVYELIR ARYLAQFLPNHEYDRTQADFDCAGQALRAVGKRVVEPGWKRAMPEALAPARGNREEHAPQSLPALQQGGDYAVGEITLKD QQTQPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRAGIIQGLLDRGYLVRQGKALAATPAAFSLIDAVP RPIADPGTTAIWEQALDMVQSGEMPLEEFVAKQSAWMSKLVERCAGLRMTISGPPVAAGRGGKPWKKKRSASPRKTAWRR KPATAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB | AAN62317.1 | putative DNA topoisomerase III | Not tested | PAGI-3(SG) | Protein | 0.0 | 62 |
| pph56 | CAI36097.1 | Topoisomerase IA | Not tested | PPHGI-1 | Protein | 0.0 | 62 |
| topB | AAN62194.1 | putative DNA topoisomerase III | Not tested | PAGI-2(C) | Protein | 0.0 | 61 |
| topB | NP_807836.1 | DNA topoisomerase III | Not tested | SPI-7 | Protein | 5e-148 | 50 |
| topB | AAF14809.1 | topoisomerase B | Not tested | SPI-7 | Protein | 4e-148 | 50 |
| topB | NP_458624.1 | topoisomerase B | Not tested | SPI-7 | Protein | 5e-148 | 50 |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 1e-143 | 49 |
| PMI2630 | YP_002152332.1 | DNA topoisomerase III | Not tested | Not named | Protein | 3e-146 | 48 |
| topB | AAW83109.1 | TopB | Not tested | GGI | Protein | 5e-111 | 41 |
