Gene Information

Name : copR (PSTAB_2696)
Accession : YP_004715066.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2891760 - 2892443 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGCTGGTCGCCGAAGACGAGCCGAAAACCGGCACCTACCTGCAGCAGGGGCTGAGCGAGGCCGGCTTCACCGT
CGACCGCGTCACCAGCGGCACCGATGCGCTGCAGCACGTGTTGAGCGTGCCCTACGACCTGCTGATCCTTGATGTGATGA
TGCCGGGTCTGGACGGCTGGGAAGTGCTGCGACTGGTGCGTGCCTCGGGCAACGAGGTGCCGGTGCTGTTCCTCACCGCG
CGGGATCGTGTCGAGGACCGGGTCAAGGGGCTGGAGCTGGGAGCGGATGACTACCTGGTCAAGCCGTTCGCCTTTTCCGA
GCTGCTGGCGCGGGTACGCACCCTGCTGCGGCGCGGCAATGCGACGGCGCTGCAGACCCAGCTGCAGGTGGCCGACCTGC
AGGTCGACCTGCTCAAGCGTCGCGCCACGCGCGCCGGTCAGCGCATCGACCTGACCGCCAAGGAGTTCGCCCTGCTGGAA
CTGCTGTTGCGCCGGCGCGGCGAGGTGCTGCCCAAATCGCTGATCGCCTCGCAGGTGTGGGACATGAACTTCGACAGCGA
CACCAACGTCATCGAGGTGGCGATCCGCCGGCTACGGGCGAAGATCGACGATGGCTTCGAACCCAAGCTGATCCATACCG
CGCGCGGCATGGGCTACATGCTCGACGAGCCGGACGCGCCATGA

Protein sequence : 
MKLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWEVLRLVRASGNEVPVLFLTA
RDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGNATALQTQLQVADLQVDLLKRRATRAGQRIDLTAKEFALLE
LLLRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAIRRLRAKIDDGFEPKLIHTARGMGYMLDEPDAP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-50 54
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 1e-49 53

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_004715066.1 transcriptional activator CopR BAC0638 Protein 2e-75 84
copR YP_004715066.1 transcriptional activator CopR BAC0083 Protein 2e-74 81
copR YP_004715066.1 transcriptional activator CopR BAC0111 Protein 2e-63 63
copR YP_004715066.1 transcriptional activator CopR BAC0197 Protein 7e-59 62
copR YP_004715066.1 transcriptional activator CopR BAC0308 Protein 8e-59 61
copR YP_004715066.1 transcriptional activator CopR BAC0347 Protein 6e-57 59
copR YP_004715066.1 transcriptional activator CopR BAC0125 Protein 3e-55 59
copR YP_004715066.1 transcriptional activator CopR NC_002516.2.879194.p Protein 2e-24 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_004715066.1 transcriptional activator CopR VFG0596 Protein 9e-51 54
copR YP_004715066.1 transcriptional activator CopR VFG1390 Protein 4e-36 46
copR YP_004715066.1 transcriptional activator CopR VFG1389 Protein 5e-32 46
copR YP_004715066.1 transcriptional activator CopR VFG1386 Protein 4e-34 42