Gene Information

Name : copR (PSTAB_2504)
Accession : YP_004714874.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Virulence
Product : transcriptional activator CopR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2703906 - 2704583 bp
Length : 678 bp
Strand : +
Note : -

DNA sequence : 
ATGAAATTACTGGTAGCTGAAGACGAACCCAAAACCGGGGCGTATCTGCAACAAGGCCTGACTGAAGCCGGATTCACTGT
TGACCGGGTCATGACCGGGACAGATGCGCTTCAGTACGCGTTGAGTGAAACCTATGACCTGCTGATTCTGGACGTGATGA
TGCCCGGGCTGGATGGGTGGGAGGTGCTGCGCATGGTCAGGGCAGCCGGGAAAGACATGCCGGTGTTGTTCCTGACCGCC
CGTGATGGCGTGGAAGACCGCGTCAAAGGCCTTGAGCTGGGCGCGGACGACTACCTGATCAAGCCGTTCGCTTTCTCCGA
GCTTCTGGCAAGGGTCAGGACCTTGCTTCGCAGGGGCAATGGCTCCCCTACCCAGACCACCCTGAAAATTGCTGATCTCG
AAGTGGACCTGCTGAAACGCCGCGCCATCCGTGCCGGCAAGCGGATCGACCTGACCGCCAAGGAATTTGCACTGCTGGAA
TTGCTGATGCGCCGGCGCGGCGAGGTGCTGCCGAAATCCCTGATTGCCTCTCAGGTATGGGATATGAACTTCGACAGCGA
CACCAATGTCATCGAGGTCGCGGTGCGCCGTGTGCGCGCAAAAATAGACGACGACTTCGAGCCCAAGCTGATTCAGACCG
TGCGCGGCATGGGCTATATGATGGATGCGCCGGAATGA

Protein sequence : 
MKLLVAEDEPKTGAYLQQGLTEAGFTVDRVMTGTDALQYALSETYDLLILDVMMPGLDGWEVLRMVRAAGKDMPVLFLTA
RDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGNGSPTQTTLKIADLEVDLLKRRAIRAGKRIDLTAKEFALLE
LLMRRRGEVLPKSLIASQVWDMNFDSDTNVIEVAVRRVRAKIDDDFEPKLIQTVRGMGYMMDAPE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-58 59
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 2e-57 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_004714874.1 transcriptional activator CopR BAC0638 Protein 8e-82 86
copR YP_004714874.1 transcriptional activator CopR BAC0083 Protein 6e-87 81
copR YP_004714874.1 transcriptional activator CopR BAC0197 Protein 5e-68 65
copR YP_004714874.1 transcriptional activator CopR BAC0111 Protein 4e-74 64
copR YP_004714874.1 transcriptional activator CopR BAC0308 Protein 5e-68 63
copR YP_004714874.1 transcriptional activator CopR BAC0347 Protein 4e-68 61
copR YP_004714874.1 transcriptional activator CopR BAC0125 Protein 2e-67 59
copR YP_004714874.1 transcriptional activator CopR NC_002516.2.879194.p Protein 9e-32 43
copR YP_004714874.1 transcriptional activator CopR HE999704.1.gene1528. Protein 8e-30 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
copR YP_004714874.1 transcriptional activator CopR VFG0596 Protein 1e-58 59
copR YP_004714874.1 transcriptional activator CopR VFG1390 Protein 2e-42 46
copR YP_004714874.1 transcriptional activator CopR VFG1386 Protein 3e-37 43
copR YP_004714874.1 transcriptional activator CopR VFG1389 Protein 3e-38 43