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Name : capD (PSTAB_2407) Accession : YP_004714777.1 Strain : Pseudomonas stutzeri ATCC 17588 Genome accession: NC_015740 Putative virulence/resistance : Virulence Product : nucleotide sugar epimerase/dehydratase WbpM Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 2593208 - 2595220 bp Length : 2013 bp Strand : - Note : - DNA sequence : GTGTTGAGGTTTGCTGAGAAACTTCGTGCCCGTCTGGTGCGGCTGCCGAGGCGGCAGAAGCGGCTGATTCAGGTGGCGAC CGATGTGGTGCTGGTCTGGTCGGCTCTTTGGCTGGCGTTTTTCGTGCGGGTTGGCGAGGCCGGGTTTGTCGAGCCATTGA GTGGTCACGCTTGGATATTCGGTATAGCGCCGCTTCTCTCCATCCCTTTCTTTGTGCGCTTTGGCATGTACCGTGCGGTG ATGCGCTATTTCGGCAGCGATGCGCTGATGGCCATCGTCAAGGCCGTCACGCTGTCGGCGCTGACGCTGTCGCTGGCGAT CTACTGGCGGAGCGACGTGCCCAAGGTCATCCCGCGTTCGATGGTGTTCAACTACTGGTGGCTCAGCCTGGTACTGATTG GTGGCCTGCGCCTGGTGATGCGCCAGTACTTCATGGGTGACTGGTTTTCCCCCGACTCGACCATCAAGTTCAAGTTCAAG GGCAAGGATGCCGGGTTGCCGAAGGTGGCAGTTTACGGTGCCGGCGCGGCGGGTAATCAGCTGGTGGCGGCCTTGCGCAT GGGCCGGGCGATGCGACCGGTGGCCTTCATCGACGACGATCCGAACCTGCAGAACCGTTCCATTGCCGGGCTGCGCGTCT ATTCGGCCAAGCACATCACTCAGATGGTGGAGGAGACCGGCGCGGCCGAAATCCTGCTGGCCATTCCTTCTGCCTCGCGG GGCCGTCGGCGCGAGATTCTGGAAATGCTCGAGCGTTTTCCACTGCATGTGCGCAGTGTGCCTGGCTTTATGGATTTAGC GAGCGGCAAGGTGCAGGTCGAAGATATCCAGGAAGTGGATATCGCCGACCTGTTAGGGCGCGATGCTGTGCCGCCGCAGC AGGCACTGTTCGAGAAATGCATCCGCGGCAAGGTGGTGATGGTGACCGGTGCGGGTGGCTCCATCGGTTCGGAGTTGTGC CGGCAGATCCTGTCGAGCAAGCCCAAGGCGCTCCTGCTGTTCGAGCACTGCGAATTCAATCTGTACAGCATCCACCTTGA ACTGGAGAGGTTGATCGAACGGTCGTCGCTGGCAACCCGGCTGGTGCCCATCCTGGGGTCGATTCGCAACCCGGAGCGTT TGTTGGACGTGATGCGCACCTGGGAGGTGGAGACGATCTACCACGCCGCGGCTTACAAGCATGTGCCGATGGTCGAACAC AATGTGGCGGAGGGCGTACTGAACAACGTGATCGGCACCTTGAACACGGCACAGGCAGCGGTGCAGGCTGGTGTCAGCAA CTTCGTTCTAATTTCTACCGACAAGGCTGTTCGCCCGACCAATGTGATGGGCAGCACCAAGCGTGTGGCTGAGCTGATTC TGCAGGCGTTGAGCCGTGAGCCGGCACCGTGTCTGTTCGGCGCCTCCGGGGTCCATCACGTCAACAAGACGCGCTTCACC ATGGTGCGATTCGGTAATGTGCTCGGCTCGTCAGGCTCGGTGATACCGCGCTTCTATGCGCAGATTCGTGCGGGCGGGCC GGTGACGGTGACGCATCCGAAGATCACCCGTTATTTCATGACCATTCCCGAAGCGGCTCAGCTGGTGATTCAGGCGGGCT CGATGGGGCAGGGCGGTGACGTGTTCGTGCTGGATATGGGCCAGCCGGTGAAGATCGCTGAGTTGGCCGAGAAGTTGATT CATCTATCCGGTCTCAGCGTGCGTTCCGAGAAGTGTCCGCACGGGGACATTGCCATCGAGTACACCGGCCTGCGACCCGG TGAAAAGCTTTACGAGGAGCTGCTGATTGGTGACAACGTCAGTGCCACCGAGCACCCGATGATCATGCGCGCCAATGAGG AGCATCTCGATTGGGATGTACTCAAGGACCGGCTGGCGAAGCTGCTCAAGGCGGTGGAAAGCGATGATTACCCGCAGGTG CGGCAGCTGCTTCGCGAAGTAGTGAGTGGTTATGTGCCGGAGGGGGAGATCGTCGACTGGATCTATCAGCAGCGGCGAGT GGAGCTGGAATAA Protein sequence : MLRFAEKLRARLVRLPRRQKRLIQVATDVVLVWSALWLAFFVRVGEAGFVEPLSGHAWIFGIAPLLSIPFFVRFGMYRAV MRYFGSDALMAIVKAVTLSALTLSLAIYWRSDVPKVIPRSMVFNYWWLSLVLIGGLRLVMRQYFMGDWFSPDSTIKFKFK GKDAGLPKVAVYGAGAAGNQLVAALRMGRAMRPVAFIDDDPNLQNRSIAGLRVYSAKHITQMVEETGAAEILLAIPSASR GRRREILEMLERFPLHVRSVPGFMDLASGKVQVEDIQEVDIADLLGRDAVPPQQALFEKCIRGKVVMVTGAGGSIGSELC RQILSSKPKALLLFEHCEFNLYSIHLELERLIERSSLATRLVPILGSIRNPERLLDVMRTWEVETIYHAAAYKHVPMVEH NVAEGVLNNVIGTLNTAQAAVQAGVSNFVLISTDKAVRPTNVMGSTKRVAELILQALSREPAPCLFGASGVHHVNKTRFT MVRFGNVLGSSGSVIPRFYAQIRAGGPVTVTHPKITRYFMTIPEAAQLVIQAGSMGQGGDVFVLDMGQPVKIAELAEKLI HLSGLSVRSEKCPHGDIAIEYTGLRPGEKLYEELLIGDNVSATEHPMIMRANEEHLDWDVLKDRLAKLLKAVESDDYPQV RQLLREVVSGYVPEGEIVDWIYQQRRVELE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 4e-77 | 44 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 4e-75 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| capD | YP_004714777.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG0029 | Protein | 1e-114 | 45 |
| capD | YP_004714777.1 | nucleotide sugar epimerase/dehydratase WbpM | VFG1300 | Protein | 3e-74 | 43 |
