|
Name : xcpR (PSTAB_0185) Accession : YP_004712555.1 Strain : Pseudomonas stutzeri ATCC 17588 Genome accession: NC_015740 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 206665 - 208179 bp Length : 1515 bp Strand : + Note : - DNA sequence : ATGCCCGAACTCGATGTAAACGACGTGACCACGCTGCTCGAGCAGCCCGCGCAACGCCGCCTGCCGTTCGCCTTTGCCCG CCGCCACGGCGTGATCCTGCTGGAGCGCGGCGGCGAGCTGCGTCTGGGCCTGCGTGAAGGTGCCGCGCTGACCGCGGTAC AGGAGGCGCAGCGGGTGGTCGGTATGCGCTTGCCGATGCAATGGCTGGCCCAGGCGGATTTCGATCAGGCGCTCGGCGCG GCCTACCAGCACGATTCATCGGCGGCGATGCTGATGGTCGAGGGGCTGGGCAACGACCTCGACCTGGCCAGCCTGGCCGA TCAGATCCAGGAAACCGAGGACCTGCTGGAGCAGGAGGACGACGCGCCGATCATCCGCCTGATCAACGCGATCCTCGGCG AGGCGATTGCCGAGAACGCCTCGGATATCCACATCGAAACCTTCGAGAAGCGCTTGGTGATCCGCTTCCGCGTCGACGGC ATCCTCCGCGAAGTGGTGCAGCCCAAGCGCGAGCTGGCGGCGCTGCTGGTCTCGCGGATCAAGGTCATGGCCAAGCTGGA CATCGCCGAGAAGCGCATCCCGCAGGACGGGCGTATCTCGCTGCGGGTCGGCGGTCGCGAGGTGGACATACGCGTTTCCA CGCTGCCCTCGGCCAACGGCGAGCGGGTGGTGCTGCGCCTGCTGGACAAGCAGGCCGGACGTCTGACCCTGCGCCACCTG GGGATGAACGAGCAGGACCGCCGCCAGCTGGAGCAAGCGGTGAAGAAGCCCCACGGCATCATCCTGGTCACCGGCCCCAC CGGTTCGGGCAAGACCACCACGCTCTATGCCGCGCTGACGACCCTCAACGACCGTACGCGCAACATCCTCACCGTCGAAG ACCCCATCGAATACCACCTCGAAGGCATCGGCCAGACCCAGGTCAACACCAAGGTCGACATGACCTTCGCCCGCGGTCTG CGCGCCATCCTGCGTCAGGACCCGGACGTGGTGATGGTCGGCGAGATCCGCGACCAGGAAACCGCCGACATGGCCGTGCA GGCCTCGCTCACCGGTCACCTGGTGCTCTCCACGCTGCACACCAACAGCGCCATTGGCGCCGTCACGCGCCTGGTGGACA TGGGCGTCGAGCCGTTTCTGATCTCCTCGTCGCTGCTCGGCGTGCTGGCCCAGCGCCTCGTGCGGGTGCTGTGTAATGAC TGCAAACGCGCCTACAACGCCGATGCCGCCGAGTGCGAGCTGCTCGGCGTCAGTCCGGCCGAGGCGCCGACGCTGTACCA CGCCGAAGGCTGCGAGCAATGCCGTGGCCTCGGCTACCGCGGGCGTACCGGCATCTATGAGCTGGTGCTGTTCGACGACA CCCTGCGCACCATGGTGCACACCCGCGCCAGCGAGCAGGACATGCTGCGCCATGCCCGTGAGCTGGGCCCGAGCATCCGC GAGGACGGGCTGCGCAAGGTGCGCGAGGGGGTGACCACCATCGAGGAAGTGCTGAGGGTGACGCGTGAGGAGTGA Protein sequence : MPELDVNDVTTLLEQPAQRRLPFAFARRHGVILLERGGELRLGLREGAALTAVQEAQRVVGMRLPMQWLAQADFDQALGA AYQHDSSAAMLMVEGLGNDLDLASLADQIQETEDLLEQEDDAPIIRLINAILGEAIAENASDIHIETFEKRLVIRFRVDG ILREVVQPKRELAALLVSRIKVMAKLDIAEKRIPQDGRISLRVGGREVDIRVSTLPSANGERVVLRLLDKQAGRLTLRHL GMNEQDRRQLEQAVKKPHGIILVTGPTGSGKTTTLYAALTTLNDRTRNILTVEDPIEYHLEGIGQTQVNTKVDMTFARGL RAILRQDPDVVMVGEIRDQETADMAVQASLTGHLVLSTLHTNSAIGAVTRLVDMGVEPFLISSSLLGVLAQRLVRVLCND CKRAYNADAAECELLGVSPAEAPTLYHAEGCEQCRGLGYRGRTGIYELVLFDDTLRTMVHTRASEQDMLRHARELGPSIR EDGLRKVREGVTTIEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-126 | 62 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-126 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| xcpR | YP_004712555.1 | general secretion pathway protein E | VFG0182 | Protein | 1e-164 | 78 |
| xcpR | YP_004712555.1 | general secretion pathway protein E | VFG2048 | Protein | 9e-126 | 61 |
| xcpR | YP_004712555.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-121 | 57 |
| xcpR | YP_004712555.1 | general secretion pathway protein E | VFG2426 | Protein | 8e-76 | 48 |
