Gene Information

Name : PSTAB_1588 (PSTAB_1588)
Accession : YP_004713958.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Unknown
Product : IS3 family transposase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 1654611 - 1655456 bp
Length : 846 bp
Strand : +
Note : -

DNA sequence :
GTGGAGTACCCGGTACGGCGTCTCTGCCAGACCCTCCAGGTACATCCCAGCGGTTACTACGCCTGGCTGGCCGAGCCGAA
ATCCGCACGCGAGAAGGAAGATCAGCGCCTGCTCGGATTGATCAAGCATGCCTGGCTGGAAAGCGGCGGGGTCTACGGCT
ACCGCAAGATCCACGACGACCTGCGTGAGCTGGGCGAGTCCTGTGGCCGGCACCGCGTGGCTCGCCTGATGCGGGTGGAG
GGGCTGCGTTCGCAGACCGGTTATCGTCGGCGCCCCGGCTATTACGGCGGTAAACCGACGGTGGCTTCGCCCAACCGCCT
GGAGCGGCAGTTCAAGGTCAGCGAGCCGAACAAGGTCTGGGTCACCGACATCACCTACATCCGCACCTATGAGGGCTGGT
TGTACTTGGCGGTGGTGCTGGATCTGTTTTCGCGCCAGGTGATCGGCTGGTCGATGAAACCACGGATGTGCAGCGACCTG
GCCATCGATGCGTTGTTGATGGCGGTCTGGCGGCGCAAGCCCAGGCAGGAGGTGATGATCCACTCCGACCAGGGCAGCCA
GTTCAGCAGCTCGGACTGGCAGAGCTTCCTAAAGGCCAACAACCTAATCAGCAGCATGAGTCGACGCGGTAACTGTCACG
ACAACGCGGTCGCGGAAAGCTTTTTCCAGTTGCTGAAGCGGGAGCGCATCCGACGGAAAACCTACGGCACTCGCGAAGAA
GCCCGCAGTGATGTGTTCGATTACATCGAGATGTTCTATAACCCCAAGCGCCGGCACAGCAGCGCTATGCAGCTGTCGCC
AGTGGAGTTTGAAAAGCGTTATTTCCAGAGCTTGGAGAGTGTCTAG

Protein sequence :
MEYPVRRLCQTLQVHPSGYYAWLAEPKSAREKEDQRLLGLIKHAWLESGGVYGYRKIHDDLRELGESCGRHRVARLMRVE
GLRSQTGYRRRPGYYGGKPTVASPNRLERQFKVSEPNKVWVTDITYIRTYEGWLYLAVVLDLFSRQVIGWSMKPRMCSDL
AIDALLMAVWRRKPRQEVMIHSDQGSQFSSSDWQSFLKANNLISSMSRRGNCHDNAVAESFFQLLKRERIRRKTYGTREE
ARSDVFDYIEMFYNPKRRHSSAMQLSPVEFEKRYFQSLESV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 1e-39 45
tnpB CAB61574.1 transposase B Not tested HPI Protein 1e-39 45
unnamed AAL57519.1 transposase 1 Not tested LEE Protein 1e-43 44
unnamed AAL57581.1 transposase 1 Not tested LEE Protein 8e-44 44
ECO111_3732 YP_003236068.1 putative IS3 transposase InsF Not tested LEE Protein 3e-43 44
insF CAC43414.1 transposase of insertion element IS3 Not tested PAI III 536 Protein 1e-45 43
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 4e-30 42
unnamed CAI43898.1 putative transposase Not tested LEE Protein 4e-31 42
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 4e-31 42
Z5089 NP_290241.1 transposase Not tested LEE Protein 6e-30 42
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 7e-30 42
unnamed AAC31485.1 L0006 Not tested LEE Protein 5e-30 42
tnpA1133 ACK44540.1 TnpA Not tested SGI1 Protein 2e-40 42
orfB AGK07032.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-40 42
orfB AGK07090.1 IS1133 transposase; OrfB Not tested SGI1 Protein 2e-40 42
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 1e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSTAB_1588 YP_004713958.1 IS3 family transposase VFG1631 Protein 6e-46 43
PSTAB_1588 YP_004713958.1 IS3 family transposase VFG0785 Protein 2e-30 42