Gene Information

Name : tnpR (PSTAB_1231)
Accession : YP_004713601.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Virulence
Product : TnAtcArs resolvase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG1961
EC number : -
Position : 1293592 - 1294155 bp
Length : 564 bp
Strand : -
Note : -

DNA sequence :
TTGCAAGGTCAACGTATCGGCTACGTCCGGGTCAGCAGCTTCGACCAAAACCCGGAGCGGCAACTGGAACAGGTCGAAGT
CGGAAAGGTATTCACCGACAAGGCATCGGGCAAGGACACCCAGCGCCCAGAACTTGACTCGCTGCTGGCCTTCGTGCGCG
AAGGAGATACGGTGGTGGTGCACAGCATGGATCGCTTGGCCCGCAACCTCGATGACCTGCGCCGCCTTGTGCAAAAGCTG
ACCAGGCGCGGTGTGCGCATCGAGTTCGTCAAAGAATGCCTGACCTTCACCGGCGAGGATTCGCCGATGGCGAACTTGAT
GTTGTCGGTCATGGGCGCGTTCGCCGAGTTCGAGCGAGCATTGATCCGCGAGCGGCAGAGGGAAGGCATCGCGCTCGCCA
AACAGCGCGGAGCTTACAGGGGCCGCAAGAAAGCGCTTTCGCCCGAACGCGCCGCTGAACTTCTGCAACGCGTCAAGGCC
GGCGAACAAAAGGCAAAGCTGGCCCGTGAATTTGGCATCAGCCGCGAAACGTTGTACCAGTACCTGCGCGAAATTGGAGC
TTAA

Protein sequence :
MQGQRIGYVRVSSFDQNPERQLEQVEVGKVFTDKASGKDTQRPELDSLLAFVREGDTVVVHSMDRLARNLDDLRRLVQKL
TRRGVRIEFVKECLTFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKALSPERAAELLQRVKA
GEQKAKLAREFGISRETLYQYLREIGA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tnpR ACY75537.1 TnpR Not tested Tn6060 Protein 5e-66 90
tnpR ACF06154.1 resolvase Not tested Tn5036-like Protein 8e-64 86
tnpR AAL08439.1 resolvase TnpR Not tested SRL Protein 4e-64 84
tnpR AFV53121.1 Tn21 resolvase Not tested AbGRI2-1 Protein 4e-64 84
tnpR YP_006098373.1 transposon Tn21 resolvase Not tested Tn2411 Protein 5e-64 84
res YP_005124341.1 DNA-invertase Not tested Not named Protein 1e-23 48
resX ADZ05759.1 invertase/resolvase Not tested AbaR10 Protein 4e-11 43
resX ACN81037.1 partial invertase/resolvase Not tested AbaR5 Protein 2e-12 43
1_365 CAJ77091.1 Resolvase N-term Not tested AbaR1 Protein 2e-12 43
resX ADZ05753.1 invertase/resolvase Not tested AbaR10 Protein 2e-12 43
resX ADZ05809.1 invertase/resolvase Not tested AbaR20 Protein 2e-12 43
resX AGK36651.1 partial invertase/resolvase Not tested AbaR26 Protein 2e-12 43
ACICU_00231 YP_001844890.1 site-specific recombinase, DNA invertase Pin protein Not tested AbaR20 Protein 2e-12 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
tnpR YP_004713601.1 TnAtcArs resolvase VFG1030 Protein 1e-64 84