Gene Information

Name : PSTAB_0103 (PSTAB_0103)
Accession : YP_004712473.1
Strain : Pseudomonas stutzeri ATCC 17588
Genome accession: NC_015740
Putative virulence/resistance : Unknown
Product : putative transposase for insertion element
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 118152 - 118979 bp
Length : 828 bp
Strand : -
Note : -

DNA sequence :
GTGAAGCTGGTCAGCGAAAGTCTCGGTGTGTCGCGCTCGCAACTGACGGCTCGAATCAAGCAGGCCAAAGAAGACAGAGG
AGCCCGTCGTCGGCGTATCCCTGACGATACGGCTCTGGTGGAGCGGATCAAGGCCTCAATCTCCGACTTGCCCAGCTATG
GCTACCGCCGGGTCTGGGCGCTTCTACGTAGGCAGGCCGAACCGGTGGTCAATGTGAAACGGGTTTATCGGGTCATGCGC
GACCATGACCTGCTGCTGGAGAAACGCCGCAAGCAGCCCGGTGTGGCTCGTCGTCATGAAGGCCGAGTGGCAGTGAGCGA
GAGTAATACCCGTTGGTGCTCGGACGGTTTTGAATTTCGTTGTGACGATGGCGCCAAGCTGCGTGTGACCTTTGCCTTGG
ACTGCTGCGACCGCGAGGCTATCAGCTGGGTAGCCAGCCCGAGTGGCTACAGCGGTGATGACGTCCGTGACGTCATGCTT
GAAGCCATCGAGAAACGTTTTGAACAGGCACTGCCTGTCACTCAGATTCAGTGGCTGAGCGATAACGGCTCGGCGTACAC
CGCCGAACAGACGCGCGCCTTTGCTCGCGAAATCGGCTTGATACCGCTGACCACGCCAGTGTGCAGCCCGCAGAGCAACG
GCATGGCCGAGAGCTTTGTGAAGACGATGAAGCGTGATTACATCGCCCATATGCCACGGCCGGATCGCCAGACAGCGCTA
CGCAACCTGGCGATTGCTTTTGAGCATTACAACGAAGAGCATCCGCACAGCGCACTGAAGTACCGCTCGCCTCGGGAGTT
CAGGCGGTTGGCCGTAACATCAACTTAA

Protein sequence :
MKLVSESLGVSRSQLTARIKQAKEDRGARRRRIPDDTALVERIKASISDLPSYGYRRVWALLRRQAEPVVNVKRVYRVMR
DHDLLLEKRRKQPGVARRHEGRVAVSESNTRWCSDGFEFRCDDGAKLRVTFALDCCDREAISWVASPSGYSGDDVRDVML
EAIEKRFEQALPVTQIQWLSDNGSAYTAEQTRAFAREIGLIPLTTPVCSPQSNGMAESFVKTMKRDYIAHMPRPDRQTAL
RNLAIAFEHYNEEHPHSALKYRSPREFRRLAVTST

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAC39283.1 hypothetical protein Not tested LPA Protein 2e-79 63
SF2985 NP_708759.1 insertion element IS2 transposase InsD Not tested SHI-1 Protein 4e-74 63
aec49 AAW51732.1 Aec49 Not tested AGI-3 Protein 2e-81 63
tnpF AAD44739.1 TnpF Not tested SHI-2 Protein 9e-75 62
unnamed AAL67379.1 transposase-like protein Not tested PAI II CFT073 Protein 6e-75 62
unnamed CAC39284.1 hypothetical protein Not tested LPA Protein 3e-76 61
S3189 NP_838472.2 insertion element IS2 transposase InsD Not tested SHI-1 Protein 2e-77 60
S4050 NP_839218.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 4e-78 60
SF3708 NP_709447.1 IS2 transposase TnpB Not tested SHI-2 Protein 4e-78 60
SF3721 NP_709460.1 IS2 transposase TnpB Not tested SHI-2 Protein 4e-78 60
insD YP_002414033.1 insertion element IS2 transposase InsD Not tested Not named Protein 3e-78 60
S4061 NP_839230.2 insertion element IS2 transposase InsD Not tested SHI-2 Protein 3e-78 60
insD YP_854263.1 IS2 transposase Not tested PAI I APEC-O1 Protein 2e-56 58
insD AAZ04432.1 IS2 transposase Not tested PAI I APEC-O1 Protein 2e-56 58
c5197 NP_757045.1 transposase insD Not tested PAI II CFT073 Protein 9e-55 57
ECO111_3773 YP_003236109.1 putative IS2 transposase InsAB Not tested LEE Protein 6e-74 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PSTAB_0103 YP_004712473.1 putative transposase for insertion element VFG0649 Protein 2e-74 63
PSTAB_0103 YP_004712473.1 putative transposase for insertion element VFG0608 Protein 2e-78 60
PSTAB_0103 YP_004712473.1 putative transposase for insertion element VFG1732 Protein 1e-78 60
PSTAB_0103 YP_004712473.1 putative transposase for insertion element VFG0621 Protein 2e-78 60