Gene Information

Name : KsgA (EGYY_26800)
Accession : YP_004712080.1
Strain : Eggerthella sp. YY7918
Genome accession: NC_015738
Putative virulence/resistance : Resistance
Product : dimethyladenosine transferase
Function : -
COG functional category : J : Translation, ribosomal structure and biogenesis
COG ID : COG0030
EC number : -
Position : 2795990 - 2796727 bp
Length : 738 bp
Strand : +
Note : rRNA methylation

DNA sequence :
ATGAACAAAAATATAAAATATTCTCAAAACTTTTTAACGAGTGAAAAAGTACTCAACCAAATAATAAAACAATTGAATTT
AAAAGAAACCGATACCGTTTACGAAATTGGAACAGGTAAAGGGCATTTAACGACGAAACTGGCTAAAATAAGTAAACAGG
TAACGTCTATTGAATTAGACAGTCATCTATTCAACTTATCGTCAGAAAAATTAAAACTGAATACTCGTGTCACTTTAATT
CACCAAGATATTCTACAGTTTCAATTCCCTAACAAACAGAGGTATAAAATTGTTGGGAGTATTCCTTACCATTTAAGCAC
ACAAATTATTAAAAAAGTGGTTTTTGAAAGCCATGCGTCTGACATCTATCTGATTGTTGAAGAAGGATTCTACAAGCGTA
CCTTGGATATTCACCGAACACTAGGGTTGCTCTTGCACACTCAAGTCTCGATTCAGCAATTGCTTAAGCTGCCAGCGGAA
TGCTTTCATCCTAAACCAAAAGTAAACAGTGTCTTAATAAAACTTACCCGCCATACCACAGATGTTCCAGATAAATATTG
GAAGCTATATACGTACTTTGTTTCAAAATGGGTCAATCGAGAATATCGTCAACTGTTTACTAAAAATCAGTTTCATCAAG
CAATGAAACACGCCAAAGTAAACAATTTAAGTACCGTTACTTATGAGCAAGTATTGTCTATTTTTAATAGTTATCTATTA
TTTAACGGGAGGAAATAA

Protein sequence :
MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLI
HQDILQFQFPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAE
CFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLL
FNGRK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ermA BAA82205.1 rRNA adenine N-6-methyltransferase Not tested Type-II SCCmec Protein 5e-54 52
ermA1 YP_039522.1 rRNA adenine N-6-methyltransferase 1 Not tested Type-II SCCmec Protein 6e-54 52
ermA NP_370576.1 rRNA methylase Not tested Type-II SCCmec Protein 6e-54 52
ermA NP_373288.1 rRNA methylase Not tested Type-II SCCmec Protein 6e-54 52
ermA-3 YP_190052.1 rRNA adenine N-6-methyltransferase Not tested Type-II SCCmec Protein 6e-54 52
ermA BAC57474.1 rRNA methylase Not tested Type-IIIinv SCCmec Protein 5e-54 52
unnamed BAB47663.1 rRNA adenine N-6-methyltransferase Not tested Type-III SCCmec Protein 1e-53 51
unnamed BAC53825.1 rRNA adenine N-6-methyltransferase Not tested SRImec-III and SCCmec-III region Protein 1e-53 51
ermC NP_273130.1 rRNA adenine N-6-methyltransferase Not tested IHT-A Protein 4e-57 50

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
KsgA YP_004712080.1 dimethyladenosine transferase AM903082.gene3.p01 Protein 2e-112 99
KsgA YP_004712080.1 dimethyladenosine transferase AM410044.gene14.p01 Protein 2e-112 99
KsgA YP_004712080.1 dimethyladenosine transferase AM180355.1.gene2254. Protein 2e-110 98
KsgA YP_004712080.1 dimethyladenosine transferase AM180355.1.gene2259. Protein 2e-110 98
KsgA YP_004712080.1 dimethyladenosine transferase NC_002745.1124324.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002745.1125313.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase AJ313523.1.orf0.gene Protein 6e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_009782.5559087.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002758.1121630.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002952.2859615.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002745.1123579.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002745.1124852.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_009782.5559229.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002758.1120012.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002952.2859614.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase NC_002745.1122822.p0 Protein 3e-54 52
KsgA YP_004712080.1 dimethyladenosine transferase M64090.gene.p01 Protein 3e-56 52
KsgA YP_004712080.1 dimethyladenosine transferase M15332.gene.p01 Protein 2e-53 51
KsgA YP_004712080.1 dimethyladenosine transferase V01278.gene.p01 Protein 2e-58 51
KsgA YP_004712080.1 dimethyladenosine transferase NC_007209.3523503.p0 Protein 2e-57 50
KsgA YP_004712080.1 dimethyladenosine transferase NC_010686.6295746.p0 Protein 2e-57 50
KsgA YP_004712080.1 dimethyladenosine transferase NC_007792.3912746.p0 Protein 7e-57 50
KsgA YP_004712080.1 dimethyladenosine transferase NC_010685.6295744.p0 Protein 2e-57 50