Gene Information

Name : LGMK_07815 (LGMK_07815)
Accession : YP_004706235.1
Strain : Leuconostoc sp. C2
Genome accession: NC_015734
Putative virulence/resistance : Virulence
Product : ATP-dependent proteinase ATP-binding subunit
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 1578072 - 1580195 bp
Length : 2124 bp
Strand : -
Note : COG0542 ATPases with chaperone activity, ATP-binding subunit

DNA sequence :
ATGGCTAACGATAACTTTTTTAATGATCCATTTGGATCAAATATGAACGATATTTTTAACAATATGATGGGTAATATGAA
TGGTTACAATTCTGAAAACAGGCGTTATTTAATTAATGGGCAAGAAGTGACACCAGAACAGTTTGCGCAATATCGACAAG
GTGGACAGTTACCAAACGGTCAACAACAGGCCCCAACAGCTGGGAACGGGCGTATGGTAGCACCACAACAACCAGGTCAA
GTTAAGCAGGAAGGTATGCTTGCTAAATTAGGTCGTAATTTAACACAAGAAGCACGTGACGGGCTGCTCGATCCAGTCAT
TGGCCGTAATAAGGAGATTCAGGAAACGGCAGAAATTTTGGGTCGTCGTACGAAGAATAATCCAGTGTTAGTTGGTGACG
CTGGCGTAGGTAAAACTGCTGTAGTTGAAGGACTTGCGCAAGCAATTGTTAACGGGGATGTACCAGCTGCTATTAAAGAT
AAGGAAATTTATTCGATTGATATTTCTAGCTTGGAAGCAGGGACACAATTCCGTGGTGCTTTTGAAGAAAATATTCAAAA
TTTGATGAAAGAAGTTAAGACAGCTGGTAATGTCATCTTATTCTTTGATGAAATTCACCAAATTTTAGGTGCTGGATCAA
CAGGTGGCGAAGATGGTGGTAAAGGATTGGCTGATATAATTAAGCCAGCTTTGAGTCGAGGTGAAATCTCGGTTATTGGT
GCCACGACGCAAGATGAATATCGTAACACGATTATGAAGAATGCAGCCCTAGCACGTCGCTTTAACGAAGTAACAGTTAA
CGCACCATCACCACAAGACACGTTACAGATTTTGAAGGGTATAGCTGCCTTGTATGAGAAGCATCATCATGTGTCGTTGC
CTGACAGTGTCTTAAAAGCAGCGGTAGATTATGCGGTTCAGTATATTCCACAACGGTCATTGCCAGATAAGGCTATTGAT
TTGTTAGATATGACAGCGGCACATTTAAGTGCTAAAAATCCAGTCACAGACAAGGTGAGTCTGGAGAAGCAGTTGAATGA
TACAAAAGCAAAGCAAGAAAGGGCTGTTACTGAAGAAGATTTTGAGGCAGCGCTAAAGTACAAAAATACAATTGCTGAAT
TAGAAAAAAAGATTTCAGGGGCAGATGAGGCAACTAAAGTCATTGCAACTGCTAATGACGTGGCTCAGTCTGTCGAGCGG
TTAACGGGTATACCTGTATCACAAATGGGTGCTTCGGATATTGAGCGTTTGAAGACGATTGGTACACGTTTGGCCGGCAA
AGTTATCGGACAAGATGAGGCGGTTAATATGGTCGCTCGCGCAATTCGCCGTAATCGTGCCGGCTTTGATGAAGGTAATC
GTCCAATTGGTAGTTTCTTATTTGTTGGCCCAACTGGTGTTGGTAAGACAGAACTTGCTAAGCAGTTAGCATTAGATATG
TTTGGTAGTAAAGAAAATATTGTACGGTTAGATATGTCAGAATATGCTGATTTGACAGCGGTTTCAAAATTAATTGGAAC
CACGGCCGGATATGTAGGTTATGATGATAACAGTAACACATTGACTGAGAAGGTACGTCGAAATCCCTATTCAATTGTCT
TGTTAGATGAAATTGAAAAAGCCAATCCACAAGTTTTGACGTTGCTCCTGCAGGTCATGGATGATGGTCGATTGACCGAT
GGTCAGGGAAATGTGGTTAACTTCAAGAACACTGTAATCATTGCAACATCAAATGCCGGGTTCTCAGATAAAAGTGACGG
TGAGTTGATGGACCGTTTGGCTCCTTATTTCCGTCCTGAATTCTTAAACCGGTTCAATGGTGTGATTGAATTCTCCGCCT
TGAGTAAAGATGATTTGAAGCAAATTGTGGATTTGATGTTAGCAGATGTCAATCAAACATTGGCTAAGAAATCATTGACT
TTACAAGTTTCTGATGCTGTTAAGAATCAACTTATTGAATCTGGTTATGATGAGGCACTCGGTGCACGACCATTACGTCG
TGTGATTGAACAACAAATTCGTGATCAAGTGACTGATTTTTATCTAGATAATCCAGGCGAAAAACAACTTAGTGCAGATT
TAATTGATGGTAAAGTTGTTATTTCAGCTGTTGTGAGTCAATAA

Protein sequence :
MANDNFFNDPFGSNMNDIFNNMMGNMNGYNSENRRYLINGQEVTPEQFAQYRQGGQLPNGQQQAPTAGNGRMVAPQQPGQ
VKQEGMLAKLGRNLTQEARDGLLDPVIGRNKEIQETAEILGRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKD
KEIYSIDISSLEAGTQFRGAFEENIQNLMKEVKTAGNVILFFDEIHQILGAGSTGGEDGGKGLADIIKPALSRGEISVIG
ATTQDEYRNTIMKNAALARRFNEVTVNAPSPQDTLQILKGIAALYEKHHHVSLPDSVLKAAVDYAVQYIPQRSLPDKAID
LLDMTAAHLSAKNPVTDKVSLEKQLNDTKAKQERAVTEEDFEAALKYKNTIAELEKKISGADEATKVIATANDVAQSVER
LTGIPVSQMGASDIERLKTIGTRLAGKVIGQDEAVNMVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDM
FGSKENIVRLDMSEYADLTAVSKLIGTTAGYVGYDDNSNTLTEKVRRNPYSIVLLDEIEKANPQVLTLLLQVMDDGRLTD
GQGNVVNFKNTVIIATSNAGFSDKSDGELMDRLAPYFRPEFLNRFNGVIEFSALSKDDLKQIVDLMLADVNQTLAKKSLT
LQVSDAVKNQLIESGYDEALGARPLRRVIEQQIRDQVTDFYLDNPGEKQLSADLIDGKVVISAVVSQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
clpC YP_005163377.1 ATP-dependent Clp protease ATP-binding subunit Not tested Not named Protein 1e-132 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGMK_07815 YP_004706235.1 ATP-dependent proteinase ATP-binding subunit VFG0080 Protein 8e-152 48
LGMK_07815 YP_004706235.1 ATP-dependent proteinase ATP-binding subunit VFG0079 Protein 3e-135 43