Gene Information

Name : LGMK_06415 (LGMK_06415)
Accession : YP_004705960.1
Strain : Leuconostoc sp. C2
Genome accession: NC_015734
Putative virulence/resistance : Virulence
Product : response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 1312740 - 1313429 bp
Length : 690 bp
Strand : -
Note : COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
ATGAGTAAAGTATTGATTGTTGAAGATGAAGAAAATTTAGCTAAATTTGTTGGACTGGAACTAAAACATGAGGGTTATGA
AGTTGAAACTGTTTTGGATGGTCGTGCAGGATTAGATGCAGCGTTAGCAAATAACTATGATGTTATTTTGCTTGATTTAA
TGTTACCTGAATTAAATGGTTTAGAAGTGGCTCGCCGCTTACGTGAGTCTAAAAAGACACCCATCATTATGATGACGGCA
CGAGATTCAGTTATTGATCGTATTTCTGGTCTAGACTATGGCGCAGATGATTACTTGGTTAAGCCATTTGCGATCGAAGA
ACTACTAGCGCGTATTCGTTCACTACTCCGTCGTATTGCAATTGAGACTGAGTCAAATGATAAGCATCGTGCGATTATTA
ATTTCAAAGATTTGCGAATCGAGAAAGAAAATCGTATTGCTCGTCGTGACAATCAAATTATTAACCTCACAAAACGCGAA
TATGACCTGCTATTGACATTGGTTGAAAATATTAATGTTGTTCAGTCACGTGAACAACTATTAAAAGAGGTTTGGGGCTT
CGATTCAGAAGTTGAAACCAATGTTGTTGATGTTTATATTCGTTACTTGCGTAATAAAATTGATGATCCAGAAAGTAAGG
CATCATATATCCAAACAGTTCGTGGTACTGGATACGTTATGCGTAGCTAA

Protein sequence : 
MSKVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELNGLEVARRLRESKKTPIIMMTA
RDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAIETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKRE
YDLLLTLVENINVVQSREQLLKEVWGFDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVMRS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-27 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 6e-27 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGMK_06415 YP_004705960.1 response regulator HE999704.1.gene1528. Protein 2e-60 67
LGMK_06415 YP_004705960.1 response regulator NC_002952.2859858.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_007622.3794948.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_003923.1003417.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_013450.8614146.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_002951.3238224.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_007793.3914065.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_002758.1121390.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator NC_010079.5776364.p0 Protein 2e-44 55
LGMK_06415 YP_004705960.1 response regulator AE015929.1.gene1106. Protein 4e-40 53
LGMK_06415 YP_004705960.1 response regulator BAC0197 Protein 2e-28 42
LGMK_06415 YP_004705960.1 response regulator NC_012469.1.7686381. Protein 1e-32 42
LGMK_06415 YP_004705960.1 response regulator BAC0308 Protein 2e-27 41
LGMK_06415 YP_004705960.1 response regulator NC_012469.1.7685629. Protein 1e-34 41
LGMK_06415 YP_004705960.1 response regulator AE016830.1.gene1681. Protein 5e-31 41
LGMK_06415 YP_004705960.1 response regulator HE999704.1.gene2815. Protein 3e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
LGMK_06415 YP_004705960.1 response regulator VFG1389 Protein 1e-29 44
LGMK_06415 YP_004705960.1 response regulator VFG1390 Protein 8e-32 43
LGMK_06415 YP_004705960.1 response regulator VFG0596 Protein 8e-28 42
LGMK_06415 YP_004705960.1 response regulator VFG0473 Protein 8e-24 41