Gene Information

Name : PPS_0652 (PPS_0652)
Accession : YP_004700115.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : two component sigma54 specific Fis family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2204
EC number : -
Position : 746474 - 747823 bp
Length : 1350 bp
Strand : -
Note : -

DNA sequence : 
GTGGCCCGAATCCTGATCGTCGACGATGACGCCGCATTCCGCGACAGCCTTGCAGAAATGCTGCAAGACCTGGGGTATAC
GGTGCTGCAGGCTGAAACCACCGATGCAGGCCTGCACAGGCTGCGCACCGAGGACGTGGATGCGGCCATCGTCGATCTGC
GGCTGCCGGGCGAGGATGGCCTGGTGTTCCTGCGCCGCGCGGCGCGCATCTCGCAGGTGCCTTGCATCATGCTCACCGCC
TATGCGAGTGGCGGCAACACCATCGAGGCGATGAGCCTGGGCGCGTTCGACCACCTGACCAAGCCCGTGACCAGGGCCGC
CCTGATCGAGACGCTCGAACGGGCCCTGCGACGGGCAGCCAAAACCCCAGACAACCCCCAGGCGGCCGGGGCATCACCTG
CCGCAAAAGAGCCCGTGGATGGCACCGAACTGGTAAGCAGCAGCGAGGCCATGCGCCAGGTCTTCAAGCGTATCGGGCTG
GCCGCGAACTCCGATGCCACTGCGTTGATCCTGGGCGAGACGGGCACAGGCAAGGAACTGGTCGCGCGTGCCTTGCATCG
CAACAGCGGGCGAGCCACCGGCCCCTTCGTCGCCGTCAACTGCGCGGCGATCCCGGCCGAACTGATGGAAAGCGAGCTGT
TCGGTCATGTCAAAGGCGCGTTCACCGGTGCCATCACTGAACGCACCGGGCGCTTTCGCGAGGCCGATGGCGGCACCCTG
TTCCTCGACGAAATAGGCGATATGCCGTTGTCCACGCAGGCGAAGATTCTGCGGGTGCTGCAGGAACGCGAAATCACCCC
AGTGGGCGCCAATCGTGCCCAGCCGGTGAACGTGCGCATCATCGTGGCCACCCACCGAGACCTGCCCAGCGCAGTCAAGG
AAGGGCGCTTCCGGGAAGACCTGTGGTACCGCCTGCAGGTAGTACCCCTGTGGCTACCGCCGCTGCGTGAGCGCCTGGGC
GACGTGCTGCTGCTGGCCGAACACTTTCTACGCCTGCTGGGCGGCGACTCGCCCAAGCGGTTGAGCGCGGCGGCAGCCCG
GCTGCTGCTGGCCCATTCCTGGCCGGGCAACGTGCGCGAACTGCGCAATGCCATGGAGCGCGCGGCCATCCTCAGCCACG
GCCCGGTCATCGAGGCCGAACACATCGGGTTGCAGACGGCGGCGGCGCCCACCCCGGGCCTGGACATTGACTGGGAAGGC
CCAATGGCACAGGCCGTTGCCCAGCTGGAGCGCGAAATGATCGTGCGCGCCCTGGCTGCGACGGCGGGCAACCGCGCAGA
GGCGGCGCGGCGCCTCGGTCTGTCCCGCCAGCAGCTCTACCGCAAGCTGGCCGAGTTCGATCTGGACTAA

Protein sequence : 
MARILIVDDDAAFRDSLAEMLQDLGYTVLQAETTDAGLHRLRTEDVDAAIVDLRLPGEDGLVFLRRAARISQVPCIMLTA
YASGGNTIEAMSLGAFDHLTKPVTRAALIETLERALRRAAKTPDNPQAAGASPAAKEPVDGTELVSSSEAMRQVFKRIGL
AANSDATALILGETGTGKELVARALHRNSGRATGPFVAVNCAAIPAELMESELFGHVKGAFTGAITERTGRFREADGGTL
FLDEIGDMPLSTQAKILRVLQEREITPVGANRAQPVNVRIIVATHRDLPSAVKEGRFREDLWYRLQVVPLWLPPLRERLG
DVLLLAEHFLRLLGGDSPKRLSAAAARLLLAHSWPGNVRELRNAMERAAILSHGPVIEAEHIGLQTAAAPTPGLDIDWEG
PMAQAVAQLEREMIVRALAATAGNRAEAARRLGLSRQQLYRKLAEFDLD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
BJAB07104_00300 YP_008207765.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR25 Protein 1e-62 45
BJAB0868_00304 YP_008211630.1 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains Not tested AbaR26 Protein 1e-62 45

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_0652 YP_004700115.1 two component sigma54 specific Fis family transcriptional regulator BAC0467 Protein 3e-72 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_0652 YP_004700115.1 two component sigma54 specific Fis family transcriptional regulator VFG1249 Protein 1e-63 44
PPS_0652 YP_004700115.1 two component sigma54 specific Fis family transcriptional regulator VFG1214 Protein 2e-65 42
PPS_0652 YP_004700115.1 two component sigma54 specific Fis family transcriptional regulator VFG0116 Protein 6e-59 41