Gene Information

Name : PPS_0628 (PPS_0628)
Accession : YP_004700093.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Unknown
Product : phage integrase family protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 719582 - 720877 bp
Length : 1296 bp
Strand : +
Note : -

DNA sequence : 
ATGGCGCGCACAGTGGTGCCTCTCACCGATCCCAAATGTGATGCGGCCAAGCCACGGGAGAAGGACTACAAGCTGTTCGA
TGGCAAGGGCCTCTACCTGCTGGTGAAGCCGTCAGGGGTCAAGACCTGGCGTATGAAGTACACCAAACCTGATGGCCGGG
ATGGTTTAGCAACGTTTGGCAACTATCCGGCGCTCGGCTTGAAAGCGGCTAGGGAGCGACGCGCTCAGGCGCTTGAGCTC
CTTGCTGCTGGGAAAGACCCCATCGAGCAGGCGCGCTTGGACAAACAGGAAGCGGCTAACGCCCGGGCGAATACATTCCG
TTTGCTTGCTCAGGAATGGCACGCGGCCTGCGCTCGTAAGTGGACGCCTGGTCATGCTGCCACCGTATGGCGACGGATCG
AATCACACCTGTTGCCCACCCTCGGTGATCGTCCGGTCGCGGAGCTGAAAACACGGGATCTGCTTGTCCCGCTGAAAGCG
GCAGAAAAGCGGGATACCTTAGATACGGCTGCACGCCTACGTCAGTACATGACGGGCATCCTCCGCATGGCAGTTCAGCA
TGGGCACCTGGACTTCAATCCTGCGATCGATCTGCAAGGCGCCACTGCTACTCGCAAAACAGCACATCGGCCTGCTCTGC
CATTTGATCGGTTACCTGAGCTTCTGCAGCGGATAGATGCCGACAGCGGGCGCGGCCTGACCAAGCTCGCGGTGCAGCTG
ACCTTGCTGGTGTTCATCCGCTCCAGTGAGCTTCGGTTCGCTCGCTGGGGAGAGATCGACATGGGGAGGTTGATGTGGGA
AATCCCTGGTGAGCGAGCTCCTATCGAGGGAGTAAAGAACTCCCATCGCGGTTCGAAGATGAGCACGCCACACTTGGTTC
CGCTCAGTCGTCAATCAGTTAGTGTCTTAGAGCGAATCCGTGATCTCACCGGCCGATTCGATTTGGTATTTGCAGGTGAT
CACCATCACTGGAAACCCATGAGCGAAAACACCGTCAACAAGGCCCTTCGACGCATGGGCTATGACACGAAGTCAGAAGT
GTGCGGCCACGGGTTTAGGACAATGGCTTGTTCAGCACTGGTTGAGTCGGGGCTGTGGAGTAAAGACGCCGTCGAGCGAC
AGATGAGCCATCAGGAGCGAAACACAGTGCGCGCAGCGTATATCCACAAAGCAGAACACATTCAGGAGCGAAGGCTCATG
GTGCAGTGGTGGGCAGATTATTTGGACGCCAATCGAGTGGAAGCGATCACCCCGTACGACTTTGCCCACCGAGATGCTGT
AGCGAGCGACATTTGA

Protein sequence : 
MARTVVPLTDPKCDAAKPREKDYKLFDGKGLYLLVKPSGVKTWRMKYTKPDGRDGLATFGNYPALGLKAARERRAQALEL
LAAGKDPIEQARLDKQEAANARANTFRLLAQEWHAACARKWTPGHAATVWRRIESHLLPTLGDRPVAELKTRDLLVPLKA
AEKRDTLDTAARLRQYMTGILRMAVQHGHLDFNPAIDLQGATATRKTAHRPALPFDRLPELLQRIDADSGRGLTKLAVQL
TLLVFIRSSELRFARWGEIDMGRLMWEIPGERAPIEGVKNSHRGSKMSTPHLVPLSRQSVSVLERIRDLTGRFDLVFAGD
HHHWKPMSENTVNKALRRMGYDTKSEVCGHGFRTMACSALVESGLWSKDAVERQMSHQERNTVRAAYIHKAEHIQERRLM
VQWWADYLDANRVEAITPYDFAHRDAVASDI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 8e-105 58
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 3e-110 57
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 3e-110 57
unnamed ABR13507.1 phage integrase Not tested PAGI-6 Protein 8e-118 56
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-107 55
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-109 55
SF2964 NP_708738.1 P4-type integrase Not tested SHI-1 Protein 2e-109 55
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 1e-108 55
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 6e-109 55
S4822 NP_838459.1 P4-type integrase Not tested SHI-1 Protein 2e-109 55
int AAK00456.1 Int Not tested SHI-1 Protein 3e-102 55
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 1e-107 55
int AAL51003.1 CP4-like integrase Not tested LEE Protein 1e-107 55
int-phe AAL57571.1 CP4-like integrase Not tested LEE Protein 1e-107 55
ECO103_3550 YP_003223418.1 integrase Not tested LEE Protein 1e-107 55
int AAL51028.1 CP4-like integrase Not tested LEE Protein 1e-107 55
ECO26_5300 YP_003232178.1 integrase Not tested LEE Protein 1e-107 55
int-phe AAL60261.1 Int-phe Not tested LEE Protein 1e-107 55
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-108 55
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 8e-109 55
int AAK16198.1 Int Not tested PAI-I AL862 Protein 6e-109 55
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 6e-109 55
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 6e-107 55
APECO1_1051 YP_853069.1 phage integrase Not tested PAI IV APEC-O1 Protein 1e-71 55
Z4313 NP_289539.1 pathogenicity island integrase Not tested OI-122 Protein 6e-107 54
int CAC81896.1 integrase Not tested LEE II Protein 1e-100 54
intB AAD37509.1 P4-like integrase Not tested PAI IV 536 Protein 1e-86 53
int YP_002346908.1 integrase Not tested HPI Protein 7e-93 51
y2393 NP_669700.1 prophage integrase Not tested HPI Protein 7e-93 51
int2 NP_993013.1 integrase Not tested HPI Protein 7e-93 51
int CAA08754.1 integrase Not tested HPI Protein 2e-93 51
int CAA21384.1 - Not tested HPI Protein 7e-93 51
int CAB59974.1 integrase Not tested HPI Protein 2e-94 51
STY4821 NP_458899.1 integrase Not tested SPI-10 Protein 4e-96 51
int NP_458759.1 bacteriophage integrase Not tested SPI-7 Protein 3e-97 50
int NP_807963.1 bacteriophage integrase Not tested SPI-7 Protein 3e-97 50
unnamed AAD17660.1 unknown Not tested HPI Protein 3e-89 49

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_0628 YP_004700093.1 phage integrase family protein VFG1536 Protein 5e-105 58
PPS_0628 YP_004700093.1 phage integrase family protein VFG0626 Protein 9e-110 55
PPS_0628 YP_004700093.1 phage integrase family protein VFG1693 Protein 8e-109 55