Gene Information

Name : PPS_0541 (PPS_0541)
Accession : YP_004700006.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : aldehyde dehydrogenase
Function : -
COG functional category : C : Energy production and conversion
COG ID : COG1012
EC number : -
Position : 616474 - 617994 bp
Length : 1521 bp
Strand : -
Note : -

DNA sequence : 
ATGCGTTACGCACATCCCGGTACCGAAGGCGCGAAGGTTTCCTTCAAGAGCCGCTACGGCAACTACATCGGTGGTGAGTT
CGTTCCTCCGGTAAAGGGGCAGTACTTCGAAAATACCTCCCCGGTGAATGGCAAGCTGATCGCTGAATTCCCTCGCTCCA
CTGCCGAAGACATCGACAAAGCCCTGGATGCCGCCCACGCTGCAGCCGACGCCTGGGGCCGCACTTCAGTGCAGGACCGC
TCCAACGTTCTGCTGAAGATCGCCGACCGTATCGAGCAGAACCTCGAACTGCTGGCCATTACCGAAACCTGGGACAACGG
CAAGCCGATCCGCGAAACCCTCAATGCCGACATTCCGCTGGCGGTCGACCACTTCCGCTACTTCGCTGGCTGCATCCGCG
CCCAGGAAGGCGGCGCCGCGGAAATCAACGAAGGTACCGTGGCCTACCACATCCATGAGCCACTGGGCGTGGTCGGGCAG
ATCATCCCGTGGAACTTCCCGATCCTGATGGCCGCCTGGAAGCTCGCCCCGGCCCTGGCCGCCGGCAACTGCGTGGTGCT
CAAGCCGGCCGAACAGACCCCGCTGGGCATCACCGTGCTGCTGGAAGTGATCGGTGACCTGCTGCCAAAAGGCGTGCTCA
ACGTGGTACAAGGCTATGGCCGCGAAGCCGGTGAAGCACTGGCCACCAGCAAGCGCATCGCCAAGATCGCCTTCACCGGC
TCGACCCCGGTTGGCTCGCACATCATGAAATGCGCCGCCGAGAACATCATCCCGTCCACCGTCGAACTGGGCGGCAAGTC
GCCGAACGTGTATTTCGAAGACATCATGCAAGCCGAGCCAAGCTTCATCGAGAAGGCGGCCGAAGGCATGGTGCTGGCGT
TCTTCAACCAGGGCGAGGTATGCACCTGCCCGTCACGGGCACTGGTACAGGAGTCGATCTACCCGCAGTTCATGGAAGTG
GTGATGAAGAAGGTGCTGCAGATCAAGCGCGGCGACCCGCTGGACACCGACACCATGGTCGGAGCGCAGGCCTCGCAACA
GCAGTTCGAGAAGATCCTGTCGTATCTGGACATCGCCCAGAAGGAAGGCGCCGAGTTGCTGACCGGCGGCAAGGTCGAAA
AACTGGAAGGCTCGCTGGCCACCGGTTACTACATCCAGCCGACCCTGCTCAAGGGCAACAACAAGATGCGCGTGTTCCAG
GAAGAAATCTTCGGCCCGGTGGTCAGCGTCACCACCTTCAAGGACGAAGCCGAAGCCCTGGCGATCGCCAACGACACCGA
GTTCGGCCTGGGTGCCGGCGTGTGGACCCGCGACATCAACCGTGCCTACCGCATGGGCCGTGGGATCAAGGCTGGCCGCG
TGTGGACCAACTGCTACCACCTGTACCCGGCGCATGCCGCGTTCGGTGGCTACAAGAAGTCGGGGGTCGGGCGTGAGACG
CACAAGATGATGCTTGACCACTATCAGCAGACCAAGAACCTGCTGGTGAGCTACGACATCAATCCGTTGGGCTTCTTCTA
A

Protein sequence : 
MRYAHPGTEGAKVSFKSRYGNYIGGEFVPPVKGQYFENTSPVNGKLIAEFPRSTAEDIDKALDAAHAAADAWGRTSVQDR
SNVLLKIADRIEQNLELLAITETWDNGKPIRETLNADIPLAVDHFRYFAGCIRAQEGGAAEINEGTVAYHIHEPLGVVGQ
IIPWNFPILMAAWKLAPALAAGNCVVLKPAEQTPLGITVLLEVIGDLLPKGVLNVVQGYGREAGEALATSKRIAKIAFTG
STPVGSHIMKCAAENIIPSTVELGGKSPNVYFEDIMQAEPSFIEKAAEGMVLAFFNQGEVCTCPSRALVQESIYPQFMEV
VMKKVLQIKRGDPLDTDTMVGAQASQQQFEKILSYLDIAQKEGAELLTGGKVEKLEGSLATGYYIQPTLLKGNNKMRVFQ
EEIFGPVVSVTTFKDEAEALAIANDTEFGLGAGVWTRDINRAYRMGRGIKAGRVWTNCYHLYPAHAAFGGYKKSGVGRET
HKMMLDHYQQTKNLLVSYDINPLGFF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VC0819 NP_230467.2 aldehyde dehydrogenase Not tested VPI-1 Protein 1e-149 66
aldA AAC12273.1 aldehyde dehydrogenase Virulence VPI Protein 3e-157 65
aldA AAK20747.1 aldehyde dehydrogenase Virulence VPI Protein 3e-157 65
aldA AAK20776.1 aldehyde dehydrogenase Virulence VPI Protein 3e-157 65
aldA-1 YP_001216300.1 aldehyde dehydrogenase Not tested VPI-1 Protein 2e-156 65

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_0541 YP_004700006.1 aldehyde dehydrogenase VFG0082 Protein 5e-150 66