Gene Information

Name : PPS_5240 (PPS_5240)
Accession : YP_004704647.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : DNA-binding response regulator CzrR
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 5935348 - 5936007 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
GTGGAAGACGAAATTAAAACTGCCGAATATCTTCAGCAGGGCCTATCCGAAAGCGGGTATGTCGTAGATATCGTGCACAA
TGGTGTTGACGCCCTGCACTTGTTCAATACTAACGTCTATTCGTTGGTTCTGCTGGACGTAAACCTTCCTGGCATCGACG
GTTGGGACCTTTTGGAAACCATCAGGAAAACCAGCCGGGTCCGCATCATCATGCTGACCGCTCGTGGTCGCATCAACGAC
AAGCTCAAAGGCTTGGATGGCGGAGCCGACGATTACCTTGTCAAACCCTTCGAATTCCCGGAGCTGCTCGCTCGAATCCG
TTCGCTGCAGCGGCGTGGTGATGAATTAGTCGAGAAGAGTTCGCTGAAAATTGCCGACTTGGAACTCGACTCAGTGCGCC
ATCGGGTTTTCCGCGCTGGCACACGCATCGATCTCACCACAAAGGAATTTACGCTCCTGCACCTGCTTATGAGCAGGACG
GGCGAAGCGCTGACTCGTTCTCAGATCATTTCGTTGGTCTGGGACATGAATTTTGACTGCGATACCAACGTCATCGATGT
CGCTATCCGGCGCCTTCGCTCAAAGATCGATGACCCGTTTGAAACCAAGCTCATTCACACGCTTCGTGGCGTAGGGTACG
TTTTTGAGGAACGCGCATGA

Protein sequence : 
MEDEIKTAEYLQQGLSESGYVVDIVHNGVDALHLFNTNVYSLVLLDVNLPGIDGWDLLETIRKTSRVRIIMLTARGRIND
KLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDELVEKSSLKIADLELDSVRHRVFRAGTRIDLTTKEFTLLHLLMSRT
GEALTRSQIISLVWDMNFDCDTNVIDVAIRRLRSKIDDPFETKLIHTLRGVGYVFEERA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-47 52
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-46 52

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0125 Protein 1e-54 58
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0197 Protein 1e-52 57
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0638 Protein 6e-48 57
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0083 Protein 5e-52 56
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0308 Protein 2e-49 55
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0111 Protein 1e-52 55
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR BAC0347 Protein 7e-48 52
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_007622.3794948.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR AE015929.1.gene1106. Protein 6e-24 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_003923.1003417.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_013450.8614146.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_002951.3238224.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_007793.3914065.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_002758.1121390.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_010079.5776364.p0 Protein 1e-28 41
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR NC_002952.2859858.p0 Protein 1e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR VFG0596 Protein 3e-47 52
PPS_5240 YP_004704647.1 DNA-binding response regulator CzrR VFG1390 Protein 2e-31 41