Gene Information

Name : PPS_5135 (PPS_5135)
Accession : YP_004704542.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : DNA repair protein RadC
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2003
EC number : -
Position : 5829199 - 5829726 bp
Length : 528 bp
Strand : -
Note : -

DNA sequence : 
GTGAAGTTCGGGGGGTTGCGCCAGTTGCTGGAGGCCGACCGAGAGGCCTTCGTCGGCGAGCTTGGGTTGGGCCCGGTGAG
GTACAGCCAGCTGCAGGCGCTGCTGGAGATCGGGCGCAGGCACCTTGCAACTTCGATTGAGCGTGAATCCGCGATGGACA
GCCCGGCAACGGTGAGGCGCTATTTGAAAGCGATGCTGCGACATGAAGTCAGCGAGGTGTTCGGGTGCCTCTTTCTCGAT
ACCAAGCACAGGCCGTTGGCGTTTGAAATCCTCTTCCGAGGCACGATAGATCGGGCCAGCGTCTACCCGCGGGAAGTGGT
GCGGCGGGCATTGCTGCATAACGCAGCGGCCTTGATCCTGTGCCACAACCACCCCTCGGGCAACAGTGAGCCCAGCCAGG
ACGATGTGCATTTGACCCTGTCGTTGAAGCGGGGGCTGGCGTTGATCGATGTGCGGGTGCTGGATCACATCATCATCGGT
GACGGGGAGCCGCTGTCGATGGTCGAGCATGGGTGGATTGTGGCCTGA

Protein sequence : 
MKFGGLRQLLEADREAFVGELGLGPVRYSQLQALLEIGRRHLATSIERESAMDSPATVRRYLKAMLRHEVSEVFGCLFLD
TKHRPLAFEILFRGTIDRASVYPREVVRRALLHNAAALILCHNHPSGNSEPSQDDVHLTLSLKRGLALIDVRVLDHIIIG
DGEPLSMVEHGWIVA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
radC AAN62275.1 putative DNA repair protein RadC Not tested PAGI-3(SG) Protein 6e-25 53
VC0510 NP_230161.1 DNA repair protein RadC-like protein Not tested VSP-2 Protein 6e-24 48
VC1786 NP_231421.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-25 46
VC0395_A1383 YP_001217326.1 DNA repair protein RadC Not tested VPI-2 Protein 4e-25 46
VPI2_0034 ACA01849.1 DNA repair protein RadC Not tested VPI-2 Protein 2e-25 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_5135 YP_004704542.1 DNA repair protein RadC VFG1119 Protein 1e-25 46