Gene Information

Name : PPS_4330 (PPS_4330)
Accession : YP_004703743.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : two component winged helix family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4905108 - 4905791 bp
Length : 684 bp
Strand : -
Note : -

DNA sequence : 
ATGCGCATTCTTTTGGTTGAAGACAACCGCGATATCCTGGCCAACCTGGCCGATTACCTGGGCATGAAGGGCTACACCGT
CGACTGTGCCCAGGATGGCCTGTCCGGCCTGCACCTGGCTGCCACCGAGCACTACGACCTGATCGTGCTCGACATCATGT
TGCCGGGCATCGACGGCTACACCCTGTGCAAGCGCCTGCGCGAAGACGCCCGCCGCGATACGCCGGTGATCATGCTCACC
GCCCGCGACCAACTGGACGACCGCCTGCAGGGCTTCCGCTCCGGTGCCGACGATTACCTGCTCAAGCCCTTCGCCCTGTC
GGAGCTGGCTGCCCGCATCGAAGCGGTGCTGCGCCGGGCCCAGGGCGGCGGGCGCCGCACCTTGCAGGTGGCCGACCTCA
GTTATGACCTGGACACCCTCGAAGTCACCCGCCAGGGCCGCCTGCTCAAGCTCAACCCTGTCGGCCTCAAGCTGCTGGCG
GTGCTGATGCAGAAAAGCCCGCACGTATTGCGTCGCGAAGTGCTGGAAGAAGCCCTTTGGGGAGATGATTGCCCTGACAG
CGACAGCCTGCGCAGCCACGTGCACCAGCTGCGCCAGGTGATCGACAAGCCGTTTGAAAAACCGCTGCTGCATACCGTCC
ATGGCGTCGGCTATCGCCTCGCCGAGGGCCGTGATGGAGTTTAA

Protein sequence : 
MRILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYTLCKRLREDARRDTPVIMLT
ARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRRAQGGGRRTLQVADLSYDLDTLEVTRQGRLLKLNPVGLKLLA
VLMQKSPHVLRREVLEEALWGDDCPDSDSLRSHVHQLRQVIDKPFEKPLLHTVHGVGYRLAEGRDGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 3e-33 42
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 3e-32 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_4330 YP_004703743.1 two component winged helix family transcriptional regulator BAC0197 Protein 2e-35 43
PPS_4330 YP_004703743.1 two component winged helix family transcriptional regulator BAC0125 Protein 3e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_4330 YP_004703743.1 two component winged helix family transcriptional regulator VFG0596 Protein 1e-33 42
PPS_4330 YP_004703743.1 two component winged helix family transcriptional regulator VFG1390 Protein 3e-31 41