Gene Information

Name : PPS_3801 (PPS_3801)
Accession : YP_004703222.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Unknown
Product : integrase catalytic protein
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG2801
EC number : -
Position : 4286119 - 4286916 bp
Length : 798 bp
Strand : -
Note : -

DNA sequence :
GTGCTTGGGGTTAAGCGCAGCAGTTTCTATGCATGGCGCAAACGGCAAGGACGTGAAAACCCGGCCAGAGATGCTCTACG
CCTGCTGGTAATCAAGCACTTCAACGCATCGCGAGGGGCTTCTGGCTCACGAACACTCATGCAGGAGCTGCGGCATGAAG
GCCATGAAGTCGGGCGGTACAAAGTGCGTGCGTTGATGCGTGAAGCTGGCCTGAAGTGCAAGCAGCGCAGGCCGCACCGC
TATCGGTCATCAGGGGCAGAAGCGTTGATCGCCGAGAATCAGCTGAAGCGCAATTTCAAGGTTTCGGCGATCAATGAGGT
TTGGTGTGGCGATGTGACCTACATCCAGGTTGGCAGGCGCTGGCTGTACCTAGCCGCCGTGATTGACCTCTATGCCCGTC
GCGTAGTGGGTTGGGCATTCTCGATGATTGTAGATGCCAACTTGGCTTGTAACGCCCTGCGCATGGCCGCTGAATCGCGG
GGTAGGCCGGCGGGCGTAATGTTTCATTCAGACCAGGGCTGTCAGTACACCAGCCATAAACTCAGAGCCGCGCTCGATGA
GTACAACTTGAAGCAGAGTATGAGCCATCGAGGCCAATGCTGGGATAACGCTGCCATGGAGCGATTCTTCGGAGCATTGA
AATCAGAATGGGTGCCGGCAGAGGGTTACGAGACCGAAGCGCAAGCACGAGTGGATATCCAGGCTTATCTGATGCGCTAC
AACCTCAAGCGCCTCCACAGCTACAACGGCTATGAAACGCCAGTAGCCATGGAGGAAAAGCTCAAGGCAGCGGCATGA

Protein sequence :
MLGVKRSSFYAWRKRQGRENPARDALRLLVIKHFNASRGASGSRTLMQELRHEGHEVGRYKVRALMREAGLKCKQRRPHR
YRSSGAEALIAENQLKRNFKVSAINEVWCGDVTYIQVGRRWLYLAAVIDLYARRVVGWAFSMIVDANLACNALRMAAESR
GRPAGVMFHSDQGCQYTSHKLRAALDEYNLKQSMSHRGQCWDNAAMERFFGALKSEWVPAEGYETEAQARVDIQAYLMRY
NLKRLHSYNGYETPVAMEEKLKAAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
l7094 CAD33743.1 ORF B protein Not tested PAI I 536 Protein 2e-46 50
orfB CAE85178.1 OrfB protein, IS911 Not tested PAI V 536 Protein 2e-46 50
RS04 AAP82949.1 putative transposase Not tested PAPI-2 Protein 1e-51 50
ECs4537 NP_312564.1 hypothetical protein Not tested LEE Protein 2e-43 49
unnamed AAC31485.1 L0006 Not tested LEE Protein 2e-43 49
unnamed ACU09432.1 IS911 transposase orfB Not tested LEE Protein 1e-44 49
Z5089 NP_290241.1 transposase Not tested LEE Protein 2e-44 49
orfB AGK06993.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-54 49
orfB AGK07051.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-54 49
VC1789 NP_231424.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-54 49
orfB YP_001217329.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-54 49
orfB ACX47958.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-54 49
VPI2_0008c ACA01825.1 transposase OrfAB subunit B Not tested VPI-2 Protein 2e-54 49
orfB AGK06910.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-54 49
overlap with orfA characteristic of IS3 family members AGK06947.1 IS1359 transposase; OrfB Not tested SGI1 Protein 2e-54 49
unnamed CAI43898.1 putative transposase Not tested LEE Protein 3e-43 47
aec65 AAW51748.1 Aec65 Not tested AGI-3 Protein 3e-43 47
ECO111_3779 YP_003236114.1 putative IS602 transposase OrfB Not tested LEE Protein 7e-47 46
tnpB CAB61574.1 transposase B Not tested HPI Protein 9e-40 45
trp1329B CAB46576.1 IS1329 transposase B Not tested HPI Protein 5e-40 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_3801 YP_004703222.1 integrase catalytic protein VFG1484 Protein 1e-46 50
PPS_3801 YP_004703222.1 integrase catalytic protein VFG0785 Protein 7e-45 49
PPS_3801 YP_004703222.1 integrase catalytic protein VFG1122 Protein 1e-54 49