Gene Information

Name : PPS_3758 (PPS_3758)
Accession : YP_004703179.1
Strain : Pseudomonas putida S16
Genome accession: NC_015733
Putative virulence/resistance : Virulence
Product : flagellar biosynthesis protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : -
Position : 4242859 - 4243617 bp
Length : 759 bp
Strand : -
Note : -

DNA sequence : 
GTGATGAGTGGCGCGCTGCGTGTGTTGTTGACTCTGGCGCTGCTGCTGGCTGCGCCGCTGGCCCTGGGTGCCGACCCGCT
GTCGATCCCGGCCATTACCCTGTCCAATACCCCGGACGGGCAGCAGGAATATTCGGTCAGCCTGCAGATCCTGCTGATCA
TGACTGCGCTCAGCTTCATCCCGGCGTTCGTCATCCTGATGACCAGCTTCACCCGCATCATCATCGTGTTCTCGATCCTG
CGTCAGGCCTTGGGCCTGCAGCAGACGCCGTCGAACCAGTTGCTGACCGGCATGGCGCTGTTCCTGACCATGTTCATCAT
GGCGCCGGTGTTCGACCGGGTGAACCAGGACGCCCTGCAGCCGTACCTGAAGGAGCAGATGACCGCCCAGCAGGCCATCG
ACAAGGCCCAGGGGCCGCTCAAGGACTTCATGCTGGCACAAACCCGGCAAAGCGACCTCGACCTGTTCATGCGCCTGTCC
AAGCGTACCGACATCGCCGGCCCGGACCAGGTGCCGCTGACGATCCTGGTGCCGGCGTTCGTCACCTCCGAGCTGAAGAC
CGCGTTCCAGATCGGTTTCATGATTTTCATCCCGTTCCTGATCATCGACATGGTGGTGGCCAGCGTGCTGATGGCCATGG
GTATGATGATGCTGTCGCCGCTGATCATCTCGCTGCCGTTCAAGATCATGCTGTTCGTGCTGGTCGATGGCTGGGCGCTG
ATCATGGGTACCCTGGCCAGTAGTTTCGGCGGCGTCTGA

Protein sequence : 
MMSGALRVLLTLALLLAAPLALGADPLSIPAITLSNTPDGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSIL
RQALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLS
KRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWAL
IMGTLASSFGGV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-29 42
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-29 42
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-29 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-31 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-32 41
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 8e-33 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 4e-32 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 4e-32 41
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 1e-22 41
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 1e-22 41
escR CAI43889.1 EscR protein Virulence LEE Protein 7e-33 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 3e-32 41
escR AAC31528.1 L0049 Virulence LEE Protein 6e-33 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 6e-33 41
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 9e-33 41
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 9e-33 41
escR AAK26700.1 EscR Virulence LEE Protein 7e-33 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 8e-33 41
escR AAL57527.1 EscR Virulence LEE Protein 7e-33 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 8e-33 41
escR CAC81847.1 EscR protein Virulence LEE II Protein 7e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG1259 Protein 2e-89 83
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG2016 Protein 7e-67 61
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG2494 Protein 2e-65 60
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG2338 Protein 8e-62 59
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG0519 Protein 5e-33 41
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG0188 Protein 1e-34 41
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG0044 Protein 1e-34 41
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG0394 Protein 7e-33 41
PPS_3758 YP_004703179.1 flagellar biosynthesis protein FliP VFG0827 Protein 3e-33 41